Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute

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AI-generated summary by claude@2026-07, 2026-07-15

EMBL-EBI developed an automated toolkit to generate Records of Processing Activities and Privacy Notices for user-facing services to comply with data protection regulations.

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AI-generated deep summary by claude@2026-07, 2026-07-15 · read from full text

This document describes a “Data protection record of processing activities” and a “privacy notice generator toolkit” associated with EMBL’s European Bioinformatics Institute, focusing on privacy governance and generating privacy notices. At a high level, it includes implementation details related to data processing transparency, and the provided content also shows embedded site components for analytics/consent and instrumentation configuration. A major limitation is that the text does not present biomedical study aims, participant cohorts, or results in the form typically used for research papers, and much of the excerpt consists of web-embedded scripts rather than scientific methods or findings. The paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

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Abstract

EMBL-EBI, Europe's biomolecular data hub, is a world leader in managing and analysing big data in biology and making it freely available to scientists worldwide. Researchers can access the open data resources and related services of EMBL-EBI by submitting minimal personal data. In May 2018, following the enforcement of the European Data Protection Regulation (GDPR), EMBL adopted the EMBL Internal Policy no. 68 on General Data Protection. It reflects European data protection principles while remaining within the bounds of EMBL's international legal status. As a result of GDPR and EMBL's Internal Policy No. 68 coming into force, 190 EMBL-EBI user-facing services that processed personal data in 2018 were required to have Records of Processing Activities (RoPA) and Privacy Notices (PN). EMBL-EBI's solution was to develop a Data Protection Engine (DPE) that automatically generates RoPA and PN when a service owner answers a series of questions. In addition to maintaining a centrally located database for RoPAs and PNs, the DPE tracks changes to the documents, as well as providing versioning and time-stamped updates. It is the aim of this article to share the EMBL-EBI IT department’s experience with designing and implementing the DPE and providing a toolkit to let others develop a similar solution and benefit from our experience. Implementation steps, benefits, challenges, opportunities, and practices are discussed and critically analysed.
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Researchers can access the open data resources and related services of EMBL-EBI by submitting minimal personal data. In May 2018, following the enforcement of the European Data Protection Regulation (GDPR), EMBL adopted the EMBL Internal Policy no. 68 on General Data Protection. It reflects European data protection principles while remaining within the bounds of EMBL's international legal status. As a result of GDPR and EMBL's Internal Policy No. 68 coming into force, 190 EMBL-EBI user-facing services that processed personal data in 2018 were required to have Records of Processing Activities (RoPA) and Privacy Notices (PN). EMBL-EBI's solution was to develop a Data Protection Engine (DPE) that automatically generates RoPA and PN when a service owner answers a series of questions. In addition to maintaining a centrally located database for RoPAs and PNs, the DPE tracks changes to the documents, as well as providing versioning and time-stamped updates. It is the aim of this article to share the EMBL-EBI IT department’s experience with designing and implementing the DPE and providing a toolkit to let others develop a similar solution and benefit from our experience. Implementation steps, benefits, challenges, opportunities, and practices are discussed and critically analysed." } { "@context": "http://schema.org", "@type": "BreadcrumbList", "itemListElement": [ { "@type": "ListItem", "position": "1", "item": { "@id": "https://f1000research.com/", "name": "Home" } }, { "@type": "ListItem", "position": "2", "item": { "@id": "https://f1000research.com/browse/articles", "name": "Browse" } }, { "@type": "ListItem", "position": "3", "item": { "@id": "https://f1000research.com/articles/11-500", "name": "Data protection record of processing activities and privacy notice..." } } ] } Home Browse Data protection record of processing activities and privacy notice... ALL Metrics - Views Downloads Get PDF Get XML Cite How to cite this article González Ferreiro M and Newhouse S. Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.12688/f1000research.121363.1 ) NOTE: If applicable, it is important to ensure the information in square brackets after the title is included in all citations of this article. Close Copy Citation Details Export Export Citation Sciwheel EndNote Ref. Manager Bibtex ProCite Sente EXPORT Select a format first Track Share ▬ ✚ Case Study Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] Montserrat González Ferreiro https://orcid.org/0000-0003-0323-856X 1 , Steven Newhouse https://orcid.org/0000-0003-1531-5198 1 Montserrat González Ferreiro https://orcid.org/0000-0003-0323-856X 1 , Steven Newhouse https://orcid.org/0000-0003-1531-5198 1 PUBLISHED 05 May 2022 Author details Author details 1 Technical Services Cluster, EMBL European Bioinformatics Institute, Hinxton, Cambridgeshire, UK Montserrat González Ferreiro Roles: Conceptualization, Formal Analysis, Methodology, Project Administration, Resources, Software, Validation, Visualization, Writing – Original Draft Preparation, Writing – Review & Editing Steven Newhouse Roles: Formal Analysis, Supervision, Validation, Writing – Review & Editing OPEN PEER REVIEW DETAILS REVIEWER STATUS This article is included in the EMBL-EBI collection. Abstract EMBL-EBI, Europe's biomolecular data hub, is a world leader in managing and analysing big data in biology and making it freely available to scientists worldwide. Researchers can access the open data resources and related services of EMBL-EBI by submitting minimal personal data. In May 2018, following the enforcement of the European Data Protection Regulation (GDPR), EMBL adopted the EMBL Internal Policy no. 68 on General Data Protection. It reflects European data protection principles while remaining within the bounds of EMBL's international legal status. As a result of GDPR and EMBL's Internal Policy No. 68 coming into force, 190 EMBL-EBI user-facing services that processed personal data in 2018 were required to have Records of Processing Activities (RoPA) and Privacy Notices (PN). EMBL-EBI's solution was to develop a Data Protection Engine (DPE) that automatically generates RoPA and PN when a service owner answers a series of questions. In addition to maintaining a centrally located database for RoPAs and PNs, the DPE tracks changes to the documents, as well as providing versioning and time-stamped updates. It is the aim of this article to share the EMBL-EBI IT department’s experience with designing and implementing the DPE and providing a toolkit to let others develop a similar solution and benefit from our experience. Implementation steps, benefits, challenges, opportunities, and practices are discussed and critically analysed. READ ALL READ LESS Keywords Data protection, personal data, GDPR, research infrastructures, intergovernmental organisations, privacy notice, record of processing activities. Corresponding Author(s) Montserrat González Ferreiro ( [email protected] ) Close Corresponding author: Montserrat González Ferreiro Competing interests: No competing interests were disclosed. Grant information: The author(s) declared that no grants were involved in supporting this work. Copyright: © 2022 González Ferreiro M and Newhouse S. This is an open access article distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. How to cite: González Ferreiro M and Newhouse S. Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.12688/f1000research.121363.1 ) First published: 05 May 2022, 11 :500 ( https://doi.org/10.12688/f1000research.121363.1 ) Latest published: 05 May 2022, 11 :500 ( https://doi.org/10.12688/f1000research.121363.1 ) Introduction The European Molecular Biology Laboratory (EMBL) is the leading intergovernmental laboratory for life science research in Europe. Aimed at advancing the study and understanding of molecular biology, training young scientists and fostering innovation in science and technology alike. It has six sites in five host nations - one of which is EMBL’s European Bioinformatics Institute (EMBL-EBI). EMBL is an intergovernmental organisation, subject to international public law, entrusted with a number of privileges and immunities necessary for its functions. Accordingly, it has the power to self-regulate data protection. Such self-regulation is necessary to take account of EMBL’s status as an intergovernmental organisation, and its focus on scientific research beyond national borders. 1 The EMBL Internal Policy no. 68 on General Data Protection defines EMBL's self-regulation in response to the requirements of the European General Data Protection Regulation (GDPR), which came into force in May 2018. 2 As a result of GDPR and the coming EMBL Internal Policy no. 68 requirements, EMBL-EBI had to prepare nearly 200 Records of Processing Activities (RoPA) and Privacy Notices (PN) for data processing activities, including scientific and IT services, within less than four months. To expedite and automate this process, EMBL-EBI developed the Data Protection Engine (DPE), which uses a set of questions and templates to automatically generate all the required documents. Steps to design the Data Protection Engine To simplify the design of the DPE, we used a form to collect the necessary information from Service Owners regarding their data processing activities in order to generate RoPAs and PNs automatically. The information collected in the form is used to complete templates for RoPAs and PNs. With the templates and questionnaire ready, we defined the DPE workflow to facilitate collaboration between staff, service owners, and data protection specialists. As soon as the workflow design was complete, the implementation began, and notifications were added to improve workflow management. Creating the templates for Records of Processing Activities The RoPAs are inventories of the personal data that is being processed and how it is being processed. In our analysis, we determined that we needed at least two RoPA templates: one for EMBL-EBI to use as a data controller, the other for EMBL-EBI to use as a data processor. On occasion, EMBL-EBI acts as a joint data controller, but these cases are not as common. In such cases, EMBL-EBI will share the data controller RoPA template with other controllers so they can use it to jointly define the content and shape. The template for EMBL-EBI as a data controller reflects that it is processing the personal data and determines the purposes and means of the processing of personal data (see Template 1, Extended data 3 ). There are three main sections in the template: data controller information, data processor information, and data protection impact assessment. The template for EMBL-EBI as a data processor reflects that it is processing the personal data on behalf of a data controller, and the purposes and means of the processing of personal data defined by the data controller (see Template 2, Extended data 3 ). There are two main sections in the template: data processor information, and data protection impact assessment. The information required to fill out the RoPA templates has been identified, and different scenarios have been considered. The options included in the templates also reflect some of the most common scenarios, such as the types of personal data processed and their purposes. Creating the templates for Privacy Notices The PN offers data subjects (in our case service users) information about how an organisation processes personal data and complies with data protection principles. Two PN templates were created. The first PN template is for use by EMBL-EBI when it is a data controller, and it collects personal data directly from data subjects. The second template is to be used when EMBL-EBI is a data controller and it collects personal data indirectly, such as when another organisation provides the data. When EMBL-EBI performs the function of a joint data controller, it shares the PN template with other controllers in order to define content and structure jointly. The PN template for a data controller who obtains personal data directly from data subjects (see Template 3, Extended data 3 ) and the PN template for a data controller who does not obtain personal data directly from data subjects (see Template 4, Extended data 3 ) have the same structure. Both include seven sections: who controls the personal data and how to contact them, the lawful basis for processing personal data, how personal data is collected and used, who has access to the personal data, data transfers to third parties or international organisations, data retention, and data subject rights. Different cases have been analysed to determine what information is needed to fill out the PN templates. The options included in the templates also reflect some of the most common scenarios, like who will have access to the personal data. Summary of the documents to be generated by the DPE In different scenarios, different results will be generated by the DPE. Mainly, we have to consider where the personal data comes from in addition to the freedom to decide how the data is to be processed. Documents generated by the DPE are summarised in Table 1 . Table 1. Outcomes produced by the Data Protection Engine (DPE), mainly Privacy Notices (PN) and Records of Processing Activities (RoPA) based on the personal data origin and level of freedom for European Molecular Biology Laboratory-European Bioinformatics Institute to decide how to process it. Personal data obtained from users Personal data not obtained from users (e.g. from other organisations) EMBL-EBI decides how to process personal data RoPA as a Data Controller PN for data obtained from data subjects RoPA as a Data Controller PN for data not obtained from data subjects EMBL-EBI has to agree with other organisations how to process the personal data RoPA as a Joint Data Controller PN for data obtained from data subjects (they will be generated using the DPE manual mode) RoPA as a Joint Data Controller PN for data not obtained from data subjects EMBL-EBI processes the personal data based on instructions from other organisations RoPA as a Data Processor PN for data obtained from data subjects RoPA as Data Processor In the case of EMBL-EBI being a Joint data controller with other organisations, both the RoPA and the PN will be created using the DPE manual mode, a mode developed to create tailored documents. Creating the Data Protection Engine questionnaire The questionnaire includes all questions necessary to obtain the information that can be used to complete the templates, as well as some information that is useful for monitoring purposes or to communicate with an appropriate contact. Because the DPE was created when the GDPR was to come into force and there was a high level of uncertainty regarding the exact requirements, we wanted a comprehensive questionnaire to allow us to expand the RoPAs and PNs as needed. The questionnaire (see Template 5, Extended data 3 ) includes nine main sections that include data on the data processor or data controller, basic information on the service that processes the personal data, sources of personal data, personal data processing responsibilities, time limits for erasure of personal data, technical and security measures used to protect personal data, a short data protection impact assessment, and the lawful basis for processing personal data. The questions are written considering EMBL and EMBL-EBI, however they can be easily adapted to request information about the processing of personal data by other organisations, as can the templates. Designing the EMBL-EBI Data Protection Engine workflow The key aim of the DPE is to facilitate the creation and review of RoPAs and PNs and to coordinate the interactions of the many roles involved: service owner, team leader and data protection administrator (DP Admin). The service owner is the operational contact for the service. A service owner reports to the team leader, who is ultimately responsible for the service processing personal data. Data protection administrators provide support to the service owner and team lead on all data protection questions and review the information they provide in the DPE. The following workflow shows how to use the DPE, from reading the user guidelines to publishing the RoPA and PN with the automatic mode, when the questionnaire generates the RoPA, and when the content needs to be customised ( Figure 1 ). Figure 1. Data Protection Engine (DPE) Workflow to create automatic or tailored Records of Processing Activities (RoPA) and Privacy Notices (PN). The workflow involves actions by Data Protection Administrator (DP Admin), Service Owner and Group Team Leader (GTL) among others. This figure is an original figure produced by the authors for this review article. The process for manual and automatic creation is nearly identical, with only one difference: the second step for manual creation already requires the involvement of the data protection specialist, who holds the role of DP Admin, and reviews all responses to the questionnaire, called the DPE record. When the manual mode is selected, there is a warning displayed to the users saying “Manual mode will freeze all the answers to the questionnaire not being able to be modified later and keep all the selected values. Only the Data Protection administrator can edit the Record of Processing Activities and Privacy Notice manually”. Manual creation also has the disadvantage that any changes to the RoPA and PN will have to be made manually. Automatic creation, on the other hand, only requires updating relevant fields in the questionnaire to generate new versions of these documents. There are notifications going to the Service Owner, Team Leader, and Data Protection Administrators, as we can see from the workflow. To ensure that there is always someone available to assist DPE users, the notifications to the Data Protection Administrators can include a list of people. Data Protection Engine current status and future work In January 2022, we had 259 Records of Processing Activities and Privacy Notices, of which 10 were customised. Overall, the DPE has proved its usefulness with the vast majority of data processing activities following common patterns. Our decision to provide a manual option for the few uncommon cases that cannot be covered with the automatic approach appears justified. In the near future, we intend to improve notifications and send reminders to the data protection support team if requests aren't handled after one day. Additionally, we would like to make the options provided by the questionnaire regarding personal data retention periods more specific. It will also be necessary to review the templates with the EMBL Data Protection Officer in the long term, since the requirements of EMBL IP 68 and GDPR are clearer today. In the future, the DPE could be expanded as a data protection service hub by designating Data Protection Assessment as a separate entity from RoPA and PN, including links to documentation and training for EMBL staff, on demand video training for new joiners, and gathering together all the guidelines and instructions for implementation that we have collected over the years. Conclusion The toolkit includes the questionnaire to collect information from service owners and store it in a central repository, the templates to generate RoPA and PN, a recommendation to offer the possibility to create manual RoPAs and PN if they need to be tailored, for example if a specific format or look and feel is required, and the workflow designed to develop the DPE. This project saved EMBL-EBI considerable time and helped standardise data protection practices, and we are confident that it can help other organisations as well. Data availability Underlying data No underlying data are associated with this article. Extended data Open Science Framework: Supplementary materials for the Data Protection Record of Processing Activities and Privacy Notice generator toolkit by EMBL’s European Bioinformatics Institute. https://doi.org/10.17605/OSF.IO/S856G . 3 This project contains the following extended data: - 01-DP-Article-Template1-RoPA-Data Controller.docx - 02-DP-Article-Template2-RoPA-DataProcessor.docx - 03-DP-Article-Template3-PN-DataFromDataSubject.docx - 04-DP-Article-Template4-PN-DataNotFromDataSubject.docx - 05-DP-Article-Questionnaire.docx Data are available under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0). Acknowledgements Joseph Rossetto and Liang Shen, along with other team members of the EMBL-EBI Web Development team, contributed intellectually to the development of the EMBL-EBI's Data Protection Engine in 2018. We would also like to thank Daniel Gant for reviewing this article's grammar. An earlier version of this article can be found on OSF preprints (DOI: 10.31219/osf.io/3wbez ). References 1. EMBL: EMBL Internal Policy no. 68 on General Data Protection.2018. Reference source 2. Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 on the protection of natural persons with regard to the processing of personal data and on the free movement of such data, and repealing Directive 95/46/EC (General Data Protection Regulation). http 3. Gonzalez-Ferreiro M: Supplementary materials for the Data Protection Record of Processing Activities and Privacy Notice generator toolkit by EMBL’s European Bioinformatics Institute. [Dataset].2022. Publisher Full Text Comments on this article Comments (0) Version 1 VERSION 1 PUBLISHED 05 May 2022 ADD YOUR COMMENT Comment Author details Author details 1 Technical Services Cluster, EMBL European Bioinformatics Institute, Hinxton, Cambridgeshire, UK Montserrat González Ferreiro Roles: Conceptualization, Formal Analysis, Methodology, Project Administration, Resources, Software, Validation, Visualization, Writing – Original Draft Preparation, Writing – Review & Editing Steven Newhouse Roles: Formal Analysis, Supervision, Validation, Writing – Review & Editing Competing interests No competing interests were disclosed. Grant information The author(s) declared that no grants were involved in supporting this work. Article Versions (1) version 1 Published: 05 May 2022, 11:500 https://doi.org/10.12688/f1000research.121363.1 Copyright © 2022 González Ferreiro M and Newhouse S. This is an open access article distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Download Export To Sciwheel Bibtex EndNote ProCite Ref. Manager (RIS) Sente metrics Views Downloads F1000Research - - PubMed Central info_outline Data from PMC are received and updated monthly. - - Citations open_in_new 0 open_in_new 0 open_in_new SEE MORE DETAILS CITE how to cite this article González Ferreiro M and Newhouse S. Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.12688/f1000research.121363.1 ) NOTE: If applicable, it is important to ensure the information in square brackets after the title is included in all citations of this article. COPY CITATION DETAILS track receive updates on this article Track an article to receive email alerts on any updates to this article. TRACK THIS ARTICLE Share Open Peer Review Current Reviewer Status: ? Key to Reviewer Statuses VIEW HIDE Approved The paper is scientifically sound in its current form and only minor, if any, improvements are suggested Approved with reservations A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit. Not approved Fundamental flaws in the paper seriously undermine the findings and conclusions Version 1 VERSION 1 PUBLISHED 05 May 2022 Views 0 Cite How to cite this report: Pandit H. Reviewer Report For: Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.5256/f1000research.133226.r170480 ) The direct URL for this report is: https://f1000research.com/articles/11-500/v1#referee-response-170480 NOTE: it is important to ensure the information in square brackets after the title is included in this citation. Close Copy Citation Details Reviewer Report 09 May 2023 Harshvardhan Pandit , School of Computing, ADAPT Centre, Dublin City University, Dublin, Leinster, Ireland Approved with Reservations VIEWS 0 https://doi.org/10.5256/f1000research.133226.r170480 The article describes a case study where an organisation has fulfilled its obligation to manage ROPA and Privacy Notices based on the GDPR. The use of document templates to manage collection and approval processes within the organisation is described, and ... Continue reading READ ALL The article describes a case study where an organisation has fulfilled its obligation to manage ROPA and Privacy Notices based on the GDPR. The use of document templates to manage collection and approval processes within the organisation is described, and examples are provided as supplementary data. The case study is sufficiently described to present the information and its benefits, as well as outline how ROPA and Privacy Notices are managed internally. This topic has received little attention in literature and therefore the article provides valuable insight to the state of the art. In terms of limitations, the article lacks adding references to existing work for GDPR, more specifically regarding ROPA and Privacy Notices. Please see article 1 which presents ROPA requirements from an analysis of GDPR and all EU DPAs. The article contains further insight into the literature surrounding ROPA. Article 2 also describes ROPA management processes. Another limitation is comparison of ROPAs to other similar organisations, for example EDPS publishes its ROPA as public documents. Is the EMBL's ROPA also managed similarly in terms of data, structure, documents? Or are the organisational processes and information different enough that the solution described here is of limited use and must be adapted to use it elsewhere? For the ROPA templates used, it is mentioned that joint-controller cases use the same template as controllers, with shared editing of the records. However, under GDPR a joint-controller ROPA must also specify who is responsible for implementing the processing whereas a (non-joint) controller ROPA will not have this information field. So the templates would be different for the two use-cases. Please clarify this in the article, whether the controller ROPA was extended with the additional field or the controller ROPA also contained a field that is only necessary in cases of joint-controllers. Where relevant, please provide references to GDPR articles. For example, Article 30 defines the required fields for ROPA, and Articles 13 and 14 provide some of the requirements for Privacy Notices. These are important as they show where the requirements were collected from (and to assess whether these are complete) and also to link the fields back to their source (in GDPR). Please provide information on the technologies used to collect information (e.g. web forms, spreadsheets), manage it (a database if used, formats), and tools used to generate ROPA and PNs. Were there any processes to verify all required information has been provided, or that it is complete/correct, and if there was any process to use or facilitate querying e.g. find all ROPAs for a given data source or service, or also to collate information from documents such as to create a combined list of all data categories being processed. If this information is not available, it would be a good candidate for future work. As this is a case study, areas where difficulties or challenges were encountered would be welcome to identify areas of improvement. For example, as discussed above - what are the areas where technologies and tools can assist and make the process more efficient? Article 1 works with a similar motivation as the case study, and tries to argue for a common specification for ROPA based on legal requirements. Would such work improve the EMBL's processes, e.g. by providing the form and management to take information, ensure it is correct, and to enable its use in document templates (as provided). Disclaimer: I (Harshvardhan Pandit) am one of the authors of the article 1 mentioned in the review. I believe the self-promotion is justified as I believe the article is of importance to the work described here and there are no other examples that could be used instead. Is the background of the case’s history and progression described in sufficient detail? Yes Is the work clearly and accurately presented and does it cite the current literature? No If applicable, is the statistical analysis and its interpretation appropriate? Not applicable Are all the source data underlying the results available to ensure full reproducibility? Yes Are the conclusions drawn adequately supported by the results? Yes Is the case presented with sufficient detail to be useful for teaching or other practitioners? No References 1. Ryan P, Brennan R, Pandit H: DPCat: Specification for an Interoperable and Machine-Readable Data Processing Catalogue Based on GDPR. Information . 2022; 13 (5). Publisher Full Text 2. Huth D, Tanakol A, Matthes F: Using Enterprise Architecture Models for Creating the Record of Processing Activities (Art. 30 GDPR). 2019 IEEE 23rd International Enterprise Distributed Object Computing Conference (EDOC) . 2019. 98-104 Publisher Full Text | Reference Source Competing Interests: No competing interests were disclosed. Reviewer Expertise: Data Protection, Semantics, Data Governance I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above. Close READ LESS CITE CITE HOW TO CITE THIS REPORT Pandit H. Reviewer Report For: Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.5256/f1000research.133226.r170480 ) The direct URL for this report is: https://f1000research.com/articles/11-500/v1#referee-response-170480 NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article. COPY CITATION DETAILS Report a concern Respond or Comment COMMENT ON THIS REPORT Views 0 Cite How to cite this report: Linden M. Reviewer Report For: Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.5256/f1000research.133226.r137469 ) The direct URL for this report is: https://f1000research.com/articles/11-500/v1#referee-response-137469 NOTE: it is important to ensure the information in square brackets after the title is included in this citation. Close Copy Citation Details Reviewer Report 12 May 2022 Mikael Linden , CSC - IT Center for Science, Espoo, Finland Approved with Reservations VIEWS 0 https://doi.org/10.5256/f1000research.133226.r137469 Having the documentation required by GDPR, such as Privacy Notice (PN) and Records of Processing Activities (RoPA), is a non-trivial task in an organisation like EMBL-EBI which has hundreds of personal data filing systems. The paper describes a tool and ... Continue reading READ ALL Having the documentation required by GDPR, such as Privacy Notice (PN) and Records of Processing Activities (RoPA), is a non-trivial task in an organisation like EMBL-EBI which has hundreds of personal data filing systems. The paper describes a tool and process that EBI's IT department developed to collect the information from their service owners and publish it. The results may be interesting and useful for other organisations with similar challenges. To make the paper easier to read, it deserves more description of the context it relates to. Does the personal data processing covered in the paper refer to, for example: Samples deposited at EBI (some of them qualifying as their donors' personal data)? Logs of the use of EBI's services, identifying the researcher using EBI's services? Systems containing EBI's staff's personal data (such as HR or IT service logs)? The paper only lightly touches on the substance of data protection, i.e. how do the EBI services comply with their data protection obligations (that are described in PN and RoPA). The contribution of this paper is more on how to manage the process of collecting and maintaining information from hundreds of service owners in the organisation and how it can be supported by a tool. Do you think the process and tool could be applied also in a context other than PN and RoPA (for instance, for managing general service documentation, for managing information security documents such as a disaster recovery plan)? The paper describes how the (initial) information is collected from the service owners. How do you manage the process of keeping the collected information up-to-date over time? The paper mentions there are around 200 RoPAs and PNs for different personal data filing systems. Have you considered bundling them together for their easier management? For instance, services that are similar enough could share RoPA and PN. In the bottom left cell of Table 1: If EBI is a data processor, it shouldn't publish a PN as it is the responsibility of the data controller. Is the background of the case’s history and progression described in sufficient detail? Partly Is the work clearly and accurately presented and does it cite the current literature? Yes If applicable, is the statistical analysis and its interpretation appropriate? Not applicable Are all the source data underlying the results available to ensure full reproducibility? Yes Are the conclusions drawn adequately supported by the results? Yes Is the case presented with sufficient detail to be useful for teaching or other practitioners? Yes Competing Interests: No competing interests were disclosed. Reviewer Expertise: GDPR I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above. Close READ LESS CITE CITE HOW TO CITE THIS REPORT Linden M. Reviewer Report For: Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.5256/f1000research.133226.r137469 ) The direct URL for this report is: https://f1000research.com/articles/11-500/v1#referee-response-137469 NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article. COPY CITATION DETAILS Report a concern Respond or Comment COMMENT ON THIS REPORT Comments on this article Comments (0) Version 1 VERSION 1 PUBLISHED 05 May 2022 ADD YOUR COMMENT Comment keyboard_arrow_left keyboard_arrow_right Open Peer Review Reviewer Status info_outline Alongside their report, reviewers assign a status to the article: Approved The paper is scientifically sound in its current form and only minor, if any, improvements are suggested Approved with reservations A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit. Not approved Fundamental flaws in the paper seriously undermine the findings and conclusions Reviewer Reports Invited Reviewers 1 2 Version 1 05 May 22 read read Mikael Linden , CSC - IT Center for Science, Espoo, Finland Harshvardhan Pandit , Dublin City University, Dublin, Ireland Comments on this article All Comments (0) Add a comment Sign up for content alerts Sign Up You are now signed up to receive this alert Browse by related subjects keyboard_arrow_left Back to all reports Reviewer Report 0 Views copyright © 2023 Pandit H. This is an open access peer review report distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. 09 May 2023 | for Version 1 Harshvardhan Pandit , School of Computing, ADAPT Centre, Dublin City University, Dublin, Leinster, Ireland 0 Views copyright © 2023 Pandit H. This is an open access peer review report distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. format_quote Cite this report speaker_notes Responses (0) Approved With Reservations info_outline Alongside their report, reviewers assign a status to the article: Approved The paper is scientifically sound in its current form and only minor, if any, improvements are suggested Approved with reservations A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit. Not approved Fundamental flaws in the paper seriously undermine the findings and conclusions The article describes a case study where an organisation has fulfilled its obligation to manage ROPA and Privacy Notices based on the GDPR. The use of document templates to manage collection and approval processes within the organisation is described, and examples are provided as supplementary data. The case study is sufficiently described to present the information and its benefits, as well as outline how ROPA and Privacy Notices are managed internally. This topic has received little attention in literature and therefore the article provides valuable insight to the state of the art. In terms of limitations, the article lacks adding references to existing work for GDPR, more specifically regarding ROPA and Privacy Notices. Please see article 1 which presents ROPA requirements from an analysis of GDPR and all EU DPAs. The article contains further insight into the literature surrounding ROPA. Article 2 also describes ROPA management processes. Another limitation is comparison of ROPAs to other similar organisations, for example EDPS publishes its ROPA as public documents. Is the EMBL's ROPA also managed similarly in terms of data, structure, documents? Or are the organisational processes and information different enough that the solution described here is of limited use and must be adapted to use it elsewhere? For the ROPA templates used, it is mentioned that joint-controller cases use the same template as controllers, with shared editing of the records. However, under GDPR a joint-controller ROPA must also specify who is responsible for implementing the processing whereas a (non-joint) controller ROPA will not have this information field. So the templates would be different for the two use-cases. Please clarify this in the article, whether the controller ROPA was extended with the additional field or the controller ROPA also contained a field that is only necessary in cases of joint-controllers. Where relevant, please provide references to GDPR articles. For example, Article 30 defines the required fields for ROPA, and Articles 13 and 14 provide some of the requirements for Privacy Notices. These are important as they show where the requirements were collected from (and to assess whether these are complete) and also to link the fields back to their source (in GDPR). Please provide information on the technologies used to collect information (e.g. web forms, spreadsheets), manage it (a database if used, formats), and tools used to generate ROPA and PNs. Were there any processes to verify all required information has been provided, or that it is complete/correct, and if there was any process to use or facilitate querying e.g. find all ROPAs for a given data source or service, or also to collate information from documents such as to create a combined list of all data categories being processed. If this information is not available, it would be a good candidate for future work. As this is a case study, areas where difficulties or challenges were encountered would be welcome to identify areas of improvement. For example, as discussed above - what are the areas where technologies and tools can assist and make the process more efficient? Article 1 works with a similar motivation as the case study, and tries to argue for a common specification for ROPA based on legal requirements. Would such work improve the EMBL's processes, e.g. by providing the form and management to take information, ensure it is correct, and to enable its use in document templates (as provided). Disclaimer: I (Harshvardhan Pandit) am one of the authors of the article 1 mentioned in the review. I believe the self-promotion is justified as I believe the article is of importance to the work described here and there are no other examples that could be used instead. Is the background of the case’s history and progression described in sufficient detail? Yes Is the work clearly and accurately presented and does it cite the current literature? No If applicable, is the statistical analysis and its interpretation appropriate? Not applicable Are all the source data underlying the results available to ensure full reproducibility? Yes Are the conclusions drawn adequately supported by the results? Yes Is the case presented with sufficient detail to be useful for teaching or other practitioners? No References 1. Ryan P, Brennan R, Pandit H: DPCat: Specification for an Interoperable and Machine-Readable Data Processing Catalogue Based on GDPR. Information . 2022; 13 (5). Publisher Full Text 2. Huth D, Tanakol A, Matthes F: Using Enterprise Architecture Models for Creating the Record of Processing Activities (Art. 30 GDPR). 2019 IEEE 23rd International Enterprise Distributed Object Computing Conference (EDOC) . 2019. 98-104 Publisher Full Text | Reference Source Competing Interests No competing interests were disclosed. Reviewer Expertise Data Protection, Semantics, Data Governance I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above. reply Respond to this report Responses (0) Pandit H. Peer Review Report For: Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.5256/f1000research.133226.r170480) NOTE: it is important to ensure the information in square brackets after the title is included in this citation. The direct URL for this report is: https://f1000research.com/articles/11-500/v1#referee-response-170480 keyboard_arrow_left Back to all reports Reviewer Report 0 Views copyright © 2022 Linden M. This is an open access peer review report distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. 12 May 2022 | for Version 1 Mikael Linden , CSC - IT Center for Science, Espoo, Finland 0 Views copyright © 2022 Linden M. This is an open access peer review report distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. format_quote Cite this report speaker_notes Responses (0) Approved With Reservations info_outline Alongside their report, reviewers assign a status to the article: Approved The paper is scientifically sound in its current form and only minor, if any, improvements are suggested Approved with reservations A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit. Not approved Fundamental flaws in the paper seriously undermine the findings and conclusions Having the documentation required by GDPR, such as Privacy Notice (PN) and Records of Processing Activities (RoPA), is a non-trivial task in an organisation like EMBL-EBI which has hundreds of personal data filing systems. The paper describes a tool and process that EBI's IT department developed to collect the information from their service owners and publish it. The results may be interesting and useful for other organisations with similar challenges. To make the paper easier to read, it deserves more description of the context it relates to. Does the personal data processing covered in the paper refer to, for example: Samples deposited at EBI (some of them qualifying as their donors' personal data)? Logs of the use of EBI's services, identifying the researcher using EBI's services? Systems containing EBI's staff's personal data (such as HR or IT service logs)? The paper only lightly touches on the substance of data protection, i.e. how do the EBI services comply with their data protection obligations (that are described in PN and RoPA). The contribution of this paper is more on how to manage the process of collecting and maintaining information from hundreds of service owners in the organisation and how it can be supported by a tool. Do you think the process and tool could be applied also in a context other than PN and RoPA (for instance, for managing general service documentation, for managing information security documents such as a disaster recovery plan)? The paper describes how the (initial) information is collected from the service owners. How do you manage the process of keeping the collected information up-to-date over time? The paper mentions there are around 200 RoPAs and PNs for different personal data filing systems. Have you considered bundling them together for their easier management? For instance, services that are similar enough could share RoPA and PN. In the bottom left cell of Table 1: If EBI is a data processor, it shouldn't publish a PN as it is the responsibility of the data controller. Is the background of the case’s history and progression described in sufficient detail? Partly Is the work clearly and accurately presented and does it cite the current literature? Yes If applicable, is the statistical analysis and its interpretation appropriate? Not applicable Are all the source data underlying the results available to ensure full reproducibility? Yes Are the conclusions drawn adequately supported by the results? Yes Is the case presented with sufficient detail to be useful for teaching or other practitioners? Yes Competing Interests No competing interests were disclosed. Reviewer Expertise GDPR I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above. reply Respond to this report Responses (0) Linden M. Peer Review Report For: Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute [version 1; peer review: 2 approved with reservations] . F1000Research 2022, 11 :500 ( https://doi.org/10.5256/f1000research.133226.r137469) NOTE: it is important to ensure the information in square brackets after the title is included in this citation. The direct URL for this report is: https://f1000research.com/articles/11-500/v1#referee-response-137469 Alongside their report, reviewers assign a status to the article: Approved - the paper is scientifically sound in its current form and only minor, if any, improvements are suggested Approved with reservations - A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit. Not approved - fundamental flaws in the paper seriously undermine the findings and conclusions Adjust parameters to alter display View on desktop for interactive features Includes Interactive Elements View on desktop for interactive features Competing Interests Policy Provide sufficient details of any financial or non-financial competing interests to enable users to assess whether your comments might lead a reasonable person to question your impartiality. 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