Transcriptomic Analysis of CAD Cell Differentiation

2025 · doi:10.1101/2025.03.09.642086
preprint OA: closed CC-BY-NC-ND-4.0
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Abstract

CAD cells were derived from Cath.a cells, a mouse central nervous system catecholaminergic cell line. Serum-starved CAD cells undergo morphological changes and resemble isolated neurons when observed by microscopy. We carried out an RNAseq transcriptomic analysis to examine differentiated CAD cells for expression signatures related to neuronal functions, identifying ∼1900 transcripts whose expression changed with differentiation. Pathview analysis identified ∼80 KEGG pathway gene sets that were differentially expressed, including upregulation of at least 13 neuron-related pathways. This dataset can be explored more deeply, allowing further investigation into expression changes relevant to studying neuronal functions in this easy-to-culture model system.
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Abstract CAD cells were derived from Cath.a cells, a mouse central nervous system catecholaminergic cell line. Serum-starved CAD cells undergo morphological changes and resemble isolated neurons when observed by microscopy. We carried out an RNAseq transcriptomic analysis to examine differentiated CAD cells for expression signatures related to neuronal functions, identifying ∼1900 transcripts whose expression changed with differentiation. Pathview analysis identified ∼80 KEGG pathway gene sets that were differentially expressed, including upregulation of at least 13 neuron-related pathways. This dataset can be explored more deeply, allowing further investigation into expression changes relevant to studying neuronal functions in this easy-to-culture model system. Competing Interest Statement The authors have declared no competing interest. Footnotes The link to the RNAseq data (GEO accession# GSE291553) has been added. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE291553

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License: CC-BY-NC-ND-4.0