Marina Lizio; Jayson Harshbarger; Imad Abugessaisa; Shuei Noguchi; Atsushi Kondo; Jessica Severin; Chris Mungall; David J. Arenillas; Anthony Mathelier; Yulia A. Medvedeva; Andreas Lennartsson; Finn Drablos; Jordan A. Ramilowski; Owen J L Rackham; Julian Gough; Robin Andersson; Albin Sandelin; Hans Ienasescu; Hiromasa Ono; Hidemasa Bono; Yoshihide Hayashizaki; Piero Carninci; Alistair R. R. Forrest; Takeya Kasukawa; Hideya Kawaji

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Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David J. Arenillas, Anthony Mathelier, Yulia A. Medvedeva, Andreas Lennartsson, Finn Drablos, Jordan A. Ramilowski, Owen J L Rackham, Julian Gough, Robin Andersson, Albin Sandelin, Hans Ienasescu, Hiromasa Ono, Hidemasa Bono, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, Takeya Kasukawa, Hideya Kawaji

· W7041653247

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This paper updates the FANTOM web resource with expanded data and enhanced functionalities to facilitate exploration of mammalian transcriptional regulation and cellular states.

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This paper describes the update of the FANTOM5 web resource, integrating newly gathered primary data and expanded analysis results from the fifth iteration of the Functional Annotation of Mammalian Genomes project. The authors report enhancements to database functions and provide an overview of the contents and future perspectives, aiming to enable researchers to explore transcriptional regulation and cellular states across diverse mammalian cell types. A stated limitation is not emphasized in the abstract, which instead focuses on the resource’s utility and breadth. This paper does not explicitly discuss endometriosis or adenomyosis; it was included in the corpus via a keyword match in the upstream search index.

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Abstract Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian Genomes collaborative project, FANTOM5, we gathered a series of primary data and database systems into the FANTOM web resource (http://fantom.gsc.riken.jp) to facilitate researchers to explore transcriptional regulation and cellular states. In the course of the collaboration, primary data and analysis results have been expanded, and functionalities of the database systems enhanced. We believe that our data and web systems are invaluable resources, and we think the scientific community will benefit for this recent update to deepen their understanding of mammalian cellular organization. We introduce the contents of FANTOM5 here, report recent updates in the web resource and provide future perspectives. | Original language | English | |---|---| | Pages (from-to) | D737-D743 | | Number of pages | 7 | | Journal | Nucleic Acids Research | | Volume | 45 | | Issue number | D1 | | DOIs | | | Publication status | Published - 1 Jan 2017 | Fingerprint Dive into the research topics of 'Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals'. Together they form a unique fingerprint.Cite this - APA - Author - BIBTEX - Harvard - Standard - RIS - Vancouver

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