Materials
Reagents
Tissue from human organ donors
o Extraction procedures and consent forms were approved by the Internal Review
Board (IRB)
o Tissue should be extracted as soon as possible to minimize the postmortem
interval; Typically extract spinal cord tissue 1h-3h postmortem, immediately
following surgical resection of donor organs for transplantation
o We have detected spikes/spontaneous activity with tissue extracted up to 4h
postmortem
o Take note of time of life-support withdrawal and cross-clamp time
• > 96% Ethanol
• Carbogen gas (95% O2, 5% CO2)
• Deionized water
• TTC (Sigma-Aldrich, cat. no. T8877-10G)
o Warning - flammable; can cause eye/skin irritation
• Agarose (Sigma-Aldrich, cat. no. A6013-100G)
• Instant adhesive (Loctite, part no. 46551)
o Warning - Combustible liquid, causes eye irritation, may cause respiratory
irritation and genetic defects
• Protective aCSF
o Sucrose (Sigma-Aldrich, cat. no. S9378-1KG)
▪ Warning - may form combustible dust concentrations in air
o NaCl (Sigma-Aldrich, cat. no. 71380-1KG)
o D-(+)-Glucose (Sigma-Aldrich, cat. no. G8270-1KG)
o NaHCO3 (Sigma-Aldrich, cat. no. S5761-500G)
o KCl (Fisher, cat. no. P217-500)
▪ Warning - causes eye irritation; may cause respiratory tract irritation
o NaH2PO4 (Sigma-Aldrich, cat. no. S0751-500G)
o CaCl2 dihydrate (Fisher, cat. no. BP510-100)
▪ Warning - causes serious eye irritation
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o MgSO4 anhydrous (Fisher, cat. no. M65-500)
o Kynurenic acid (Sigma-Aldrich, cat. no. K3375-5G)
• Slice External Recording Solution
o NaCl (Sigma-Aldrich, cat. no. 71380-1KG)
o KCl (Fisher, cat. no. P217-500)
▪ Warning - causes eye irritation; may cause respiratory tract irritation
o NaHCO3 (Sigma-Aldrich, cat. no. S5761-500G)
o NaH2PO4 (Sigma-Aldrich, cat. no. S0751-500G)
o CaCl2 dihydrate (Fisher, cat. no. BP510-100)
▪ Warning - causes serious eye irritation
o MgCl2 hexahydrate (Fisher, cat. no. BP214-500)
▪ Warning - irritating to eyes and respiratory system
o D-(+)-Glucose (Sigma-Aldrich, cat. no. G8270-1KG)
• Internal Recording Solution
o Gluconic acid (Fisher, CAS no. 526-95-4)
▪ Warning - causes severe skin burns and eye damage
o CsOH monohydrate (Fisher, CAS no. 35103-79-8)
▪ Warning - causes severe skin burns and eye damage.
o CsCl (Fisher, CAS no. 7647-17-8)
▪ Warning - reproductive toxicity, suspected of damaging fertility or the
unborn child
o BAPTA, 1,2-bis 2-aminophenoxy ethane-n,n,n',n'-tetraacetic acid, (Thermo Fisher
Scientific, CAS no. 85233-19-8)
o HEPES (Fisher, cat no. BP310-500)
▪ Warning - may cause respiratory irritation
o Mg-ATP (Sigma-Aldrich, cat. no. A9187-1G)
▪ Warning - may cause damage to organs
o Na2-GTP (Sigma-Aldrich, cat. No. G8877-100MG)
Equipment
Surgical Spinal Cord Extraction
• Orthopedic mallet (Blacksmith Surgical, cat. no. BS-13-34011)
• Stryker System 7 Sternal Saw (not autoclavable, cat. no. 7207-000-000)
• 32-mm straight tip bone osteome (Blacksmith Surgical, BS-13-34329)
• Debakey tissue forceps (Sklar Surgical Instruments, cat no. 52-5307)
• Straight mayo scissors (Sklar Surgical Instruments, cat no. 15-1555)
• Metzenbaum scissors (Sklar Surgical Instruments, cat no. 22-1507)
• Harrington-mixter clamp (Sklar Surgical Instruments, cat no. 55-3012)
• Scalpel handle #3 (BS-01-10001) with no.10 blades (Bard-Parker, cat. no. 371110)
• 50-ml Conical tubes (Greiner, item no. 210270)
• Container filled with ice (sufficient to accommodate 6 conical tubes)
Spinal Cord Microdissection
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• Stereo microscope (Leica, M50)
• Dumont #5 straight tip forceps (Fine Science Tools, item. no. 11251-10)
• Scalpel handle with no. 10 blades (Bard-Parker, cat. no. 371110)
• Debakey tissue forceps (Sklar Surgical Instruments, cat no. 52-5307)
• Straight edge Vannas microdissection scissors (World Precision Instruments, cat. no.
500086)
• 50 mL Petri dishes (VWR)
• Styrofoam tray
Tissue Sectioning
• Vibratome with Vibrocheck (Leica, VT1200S)
• Water Bath (Fisher Scientific, Isotemp 2340)
• Custom glass dropper
• 1L Beaker
• 300mL petri dish (VWR)
• 2x Custom slice holder, or commercially available large slice holder
Patch-Clamp Recordings
• Flaming/brown micropipette puller (Sutter instrument, P-97)
• Microforge (Narishige, MF-83)
• Borosilicate glass capillary tubes (1.5/1.17mm outer/inner diameter) (Sutter instrument,
item no. BF150-117-10)**
• Microscope Axio Examiner.A1 (Zeiss)
• Headstage amplifier (Molecular Devices, CV-7B)
• Amplifier (Molecular Devices, Multiclamp 700B)
• Digitizer (Molecular Devices, Digidata 1550)
• Infrared Microscopy Camera (Dage-MTI, IR-1000)
• Micromanipulator (Scientifica, PS-7500)
• Peristaltic pump (Fisher, CTP300)
• Tygon tubing, assorted sizing (Fisher, cat no. 14-179-110)
• Tissue anchor (Warner Instruments)
• Optical Table (ThorLabs)
High-Density Microelectrode Array (hdMEA) Recordings
• hdMEA system (3Brain, BioCAM X)
• Peristaltic pump (Fisher, CTP300)
• Tissue anchor (3Brain)
• Tygon tubing, assorted sizing (Fisher, cat no. 14-179-110)
• Blunt-fill 16G needles (Fisher, cat no. BD 305180)
Software
• BrainWave v.5 (3Brain)
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• Clampfit v.11.2 (Molecular Devices)
*See equipment set-up
**!Critical step
Reagent Set-Up
5% Agarose
5% (w/v) solution in protective aCSF, heated to dissolve agarose and refrigerated to set in a petri
dish. The depth of the agarose gel should be 1 centimetre.
Protective aCSF
To prepare 1L of protective aCSF, combine the reagents listed in the table below in deionized
water. Store at 4°C and use within 2 days. Immediately prior to use, allow to bubble with
carbogen for a minimum of 20 minutes.
Reagent Final Concentration (mM) Molecular Weight (g/mol) 1L
Sucrose 50 342.3 17.115g
NaCl 92 58.44 5.376g
glucose 15 180.156 2.702g
NaHCO3 26 84.007 2.184g
KCl 5 74.5513 0.373g
NaH2PO4 1.25 119.98 0.172g
CaCl2 0.5 110.98 0.074g
MgSO4 7 120.366 0.843g
Kynurenic acid* 1* 189.17 0.039g*
*Dissolve 0.039g of kynurenic acid into 200mL of protective aCSF the day of experiments
NOTE: freeze extra protective aCSF with kynurenate in an ice cube tray in advance of hSC
experiments. To help keep the preparation cold during tissue extraction, microdissection, and
sectioning, ensure some protective aCSF ice is always visible at all stages up until slice recovery.
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Slice External Recording Solution (aCSF)
To prepare 1L of slice external recording solution, combine the reagents listed in the table below
in deionized water. Store at 4°C and use within 1 week. Immediately prior to use, allow to
bubble with carbogen for a minimum of 20 minutes.
Reagent Final Concentration (mM) Molecular Weight (g/mol) 1L
NaCl 125 58.44 7.305g
KCl 3 74.5513 0.224g
NaHCO3 26 84.007 2.184g
NaH2PO4 1.25 119.98 0.172g
CaCl2 2 110.98 0.294g
MgCl2 1 95.211 0.203g
glucose 20 180.156 3.603g
Internal Recording Solution
To prepare 10mL of internal recording solution, combine all reagents except for Mg-ATP and
Na2-GTP in 9.5mL of deionized water. Adjust the pH to 7.25 with CsOH and check the volume
to ensure it amounts to 10mL. Add Mg-ATP and Na2-GTP. 295 mOsm. Filter then freeze 1mL
aliquots and store at -20°C and use within 6 months.
Reagent Final Concentration (mM) Molecular Weight (g/mol) g/10mL
Gluconic acid 105 196.16 0.206
CsOH 105 149.912 0.157
CsCl 17.5 168.36 0.029
BAPTA 10 380.35 0.038
HEPES 10 238.3012 0.024
Mg-ATP 2 529.47 0.0101
Na2-GTP 0.5 523.18 0.0026
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TTC Staining Solution:
Prepare 10 mL of a 2% w/v solution of TTC in room temperature PROTECTIVE ACSF without
kynurenate that has been bubbled with carbogen.
Equipment Set-Up
Sternal Saw Ensure the blade of the sternal saw is facing away from the handle, so that the saw
cuts when pushing the saw away from you. Often this required turning the blade 180°.
Vibratome Calibration Securely attach the vibrating microtome blade and follow Vibrocheck
calibration instructions as described in the manufacturer’s protocol. Ensure a new blade is
installed and the system is calibrated. This calibration is critical to ensure that the vertical
deflection of the blade is minimized, thus producing slices with viable cells on the surface of the
slice. **
Custom Glass Dropper Modify a standard glass Pasteur pipette by scoring the taper of the
pipette with a diamond-tip glass cutter. Then break the tip off of the pipette and attach the bulb to
the cut end. A glass dropper gives more precision when transferring slices between solutions and
reservoirs, and tissue is less likely to attach to it.
Custom Slice Holder Cut 1-inch polyvinyl chloride (PVC) piping and using hot glue, assemble
them together to form a 9-unit grid. Secure the plastic screen beneath the grid using the same
adhesive (See Supplementary Figure 1). Commercial options are also available.
Water Bath for Slice Recovery Place a 1L beaker filled with approximately 400mL
PROTECTIVE ACSF (without kynurenate) in a water bath. Place the custom slice holder in the
beaker; it will float just below the surface, ensuring slices are separated and immersed in
PROTECTIVE ACSF, without sitting on the bottom of the beaker and risking having an area that
is not exposed to fresh oxygenated solution. Heat the water bath so that the temperature of the
PROTECTIVE ACSF is exactly 34℃. Bubble the PROTECTIVE ACSF continuously with
carbogen.
Patch-clamp Rig and hdMEA Ensure all components of the equipment are on, aCSF solution is
being bubbled with carbogen in the perfusion reserve, and recording software is open.
hdMEA Chip Preparation If required based on manufacturer recommendations, 3 days prior to
recordings fill the chip chamber with PBS to hydrate the chip. Immediately prior to use, clean the
contact pads of the chip with 96% ethanol and allow time to dry. Rinse the reservoir once with
ethanol and twice with distilled water.
Recording Glass Pipette Preparation To pull the patch pipette, mount the borosilicate glass
capillary tube onto the puller as described in the manufacturer’s protocol. Using the microforge,
gently fire-polish the glass patch-clamp pipettes, with 6-12 MΩ resistance once filled with
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internal. Ensure the pipette has a tapered and conical structure to facilitate sealing and prevent
plugging.
Spinal Cord Extraction (Timing - 30-50 minutes):
CRITICAL The amount of space within the visceral cavity to perform the following steps will
vary depending on the organs harvested for donation, as well as the amount of visceral body fat
of the donor. The procedure is made more difficult with fewer organs removed and/or if the
donor has a large amount of visceral fat. In the case of limited access to the spinal column,
extend as rostrally as possible. The dissection tools used below were made available for this
extraction protocol in the operating room. Investigators should coordinate with their transplant
service and hospital regarding whether they need to provide their own instruments.
! CAUTION Sterile operating room procedures must be followed for tissue extraction in the
operating room. Exercise proper safety precautions (e.g. gloves, mask, eye protection, scrubs,
surgical gown) when working with human tissues.
1. Immediately before leaving the laboratory space to go to the operating room,
prepare several 50mL conical tubes filled with bubbled 0-4℃ protective aCSF
containing kynurenate in a Styrofoam box filled with ice. Ensure that the
canonical tubes have screw-top lids, which are securely tightened to avoid
dissipation of oxygen. The remaining protective aCSF should continue to be
bubbled on ice in the laboratory space during the spinal cord extraction.
2. Using a surgical towel and retractor, contain the remaining organs to expose the
spinal column.
3. Locate the sacral promontory. Then, count the lumbar vertebrae to identify L2.
4. Use an osteotome and mallet to make a transverse, wedge-shaped osteotomy
through the L2 vertebral body (Figure 2Ai). Ensure the wedge is sufficiently wide
to expose the spinal canal and allow the footplate of the sternal saw to be placed
inside the spinal canal, without penetrating the dura.
5. Mobilize all organs to one side, exposing as much length of the spinal column as
possible on one lateral side. Insert the footplate of the sternal saw and angle the
saw at 45° medially (Figure 2B). Pushing the sternal saw away from you, cut
through the vertebral bodies in a caudal to rostral direction as rostrally as the
accessibility within the body cavity will allow (Figure 2Aii). In cases where the
heart and lungs are removed, this may be to the top of the surgical incision in the
ribcage. If many organs remain, cut as high as possible. Then move the organs to
the other side and repeat on the other side.
CRITICAL STEP Once inserted into the spinal canal, it is critical to hold the
footpad of the saw firmly against the anterior wall of the spinal canal to ensure the
footpad does not damage the spinal cord below.
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CRITICAL STEP Do not change the angle of the sternal saw. Changing this angle
may break the blade of the saw or result in difficulty retrieving the saw.
? Troubleshooting In some cases, particularly if the donor is a tall, broad male,
the thickness of the vertebral body may exceed the length of the blade of the
sternal saw. If the blade of the saw is not sufficiently long, this step can be
performed with a straight osteotome. This adjustment may be necessary, but
significantly increases the time required for hSC extraction.
6. Use a straight osteotome to detach the vertebral bodies, taking care not to
perforate the dura or damage the spinal cord below (Figure 2Aiii).
7. Using a closed Harrington-Mixter clamp to gently lift the thecal sac, transect the
thecal sac with Mayo or Metzenbaum scissors at the L2 level. Holding only the
dura (not any roots or the hSC), gently lift the thecal sac. Using Mayo or
Metzenbaum scissors, transect the nerve roots and fascia that hold the thecal sac
in the spinal canal. Once the exposed length of the thecal sac is freed, transect the
rostral end of the exposed thecal sac. Transfer to a folded surgical towel for
microdissection.
CRITICAL STEP Do not lift the dura more than 20° from the spinal canal, and do
not put excess tension on the thecal sac. Lifting the thecal sac at too abrupt an
angle will severely damage the grey matter of the hSC. It is better to carefully cut
under and around the thecal sac without fully being able to see than to lift it too
high.
8. On a surgical towel, use forceps to lift the dura off the spinal cord. Using Mayo
scissors, quickly and gently cut from caudal to rostral, exposing the hSC.
9. Using forceps and a number 10 blade, section the hSC into 1.5cm pieces and
immediately place in prepared, ice-cold, pre-bubbled protective aCSF with
kynurenate for transport to the laboratory.
CRITICAL STEP Time sensitive. It is critical to get the extracted tissue into
oxygenated protective solution as quickly as possible; It is critical that the number
10 blade is used gently. Unlike typical scalpel use, we recommend using the
forceps to gently secure the hSC on either side, not putting any pressure on the
hSC itself. Then, using only the weight of the number 10 blade and handle, slowly
saw back and forth across the hSC. Using the typical scalpel technique of one
swift incision creates excess shearing force and downward pressure and can be
very damaging to the hSC.
TIP: We have found that using the conus terminalis/sacral spinal cord region for
electrophysiological recordings is the most practical, as the smaller tissue
diameter makes sectioning easier.
Spinal Cord Microdissection (Timing – 30-60 minutes)
! CAUTION Follow proper safety precautions when working with and disposing of materials
containing human tissues.
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10. Place a piece of hSC in a 100mm petri dish filled with ice-cold protective aCSF
with kynurenate to fully submerge the hSC. Keep the petri dish on ice in a
Styrofoam tray for the duration of cleaning and dissection. Bubble the protective
aCSF with carbogen and continually add protective cutting solution ice cubes as
they melt over time.
11. Using Dumont #5 straight-tip forceps and straight-edge Vannas microdissection
scissors, gently remove the anterior and posterior roots. Begin by securing a root
with the forceps, and with the scissors gently follow the root to the surface of the
hSC. Gently, using as little force as possible, align the scissors so they are parallel
to the surface of the hSC and cut to remove the root (Figure 3A, Supplementary
Video 1). Repeat for all roots.
12. Using Dumont #5 straight-tip forceps and straight-edge Vannas microdissection
scissors, pinch the remaining meninges as superficially as possible and cut to
remove a small portion of the meninges. Continue this process piece by piece
until all the meninges are removed (Supplementary Video 1).
CRITICAL STEP This step is painstaking and slow, but the utmost care should be
taken to remove as much of the meninges as possible to ensure sectioning on the
vibratome does not damage the slices. We have found that the more difficult the
removal of the remaining meninges, the higher quality of hSC. If the pia and
arachnoid layer easily peel away, or if there is excessive fraying of the underlying
white matter, this may indicate the hSC is disintegrating and not viable for
experiments. To fully remove the remaining meninges, it is often necessary to
pinch and cut away a small amount of the superficial white matter. This does not
impact the underlying grey matter, which is located more internally than in the
rodent spinal cord.
13. Perform a visual inspection of the exposed area of the grey matter to ensure that
there are no hematomas or other damage and that the edge of the tissue is straight
and perpendicular to the length of the hSC. If the edge is not straight or there is
damage, use Debakey tissue forceps and a number 10 blade to remove tissue and
straighten out the edge of the piece of hSC, as described in Step 9.
Spinal Cord Sectioning and Recovery (Timing – 2-4 hours)
! CAUTION Follow proper safety precautions when working with and disposing of materials
containing human tissues.
14. Using a razor blade, cut a piece of agarose that is barely longer and wider than
your hSC segment (typically 12mm x 14mm). Ensure the agarose has
approximately 90° corners to make sure the slices will be straight. Glue one of the
two smallest faces of the agarose block to a vibratome specimen plate using
instant adhesive (Figure 3B, Supplementary Video 1). Confirm that the angle
created by the chuck and the agarose block is 90°.
15. Place a small dab of instant adhesive on the specimen holder directly in front of
the agarose block. Place a thin line of adhesive on the edge of the agarose that
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faces the first dab of adhesive. With a folded kimwipe, spread the adhesive into a
thin, even coat.
CRITICAL STEP ! Do not use excessive adhesive. Excess adhesive may wick
around the hSC when solution is poured in and then may catch the vibratome
blade, damaging the slices.
16. Using Debakey forceps and the flat end of a scoopula, pick up the hSC segment
by the posterior side if studying the posterior (dorsal in rodents) horn, and by the
anterior side of studying the anterior (ventral in rodents) horn. Gently touch the
edge of the hSC segment to the edge of the petri dish to allow excess protective
aCSF to flow off of the hSC segment. Gently place the hSC segment on the
specimen holder and agarose block covered in adhesive, with the area of interest
(anterior or posterior horns) facing out (Figure 3B, Supplementary Video 1).
17. Immediately place the specimen holder with the attached hSC segment in the
buffer tray of a vibratome, with the ice tray lined with ice to ensure it remains ice-
cold throughout sectioning. Immediately immerse in ice-cold protective aCSF
with kynurenate bubbled with carbogen, by pouring the solution gently into the
side of the buffer tray until it reaches the height to completely submerse the spinal
cord segment. Bubble with carbogen throughout sectioning and continually add
protective cutting solution ice cubes to maintain a temperature of 0-4°C.
18. At a cutting speed of 0.01-0.02mm/s and a horizontal blade amplitude of 2.75mm,
remove a thick (>500 μm) slice off the mounted hSC. This slice should be thick
enough to create a level surface from which future 500μm slices can be cut. A
number 10 scalpel blade may be required to free the slice from the agarose block
(Supplementary Video 1).
! Troubleshooting
19. While this first slice is being sectioned, prepare the TTC solution.
20. Place the freshly sectioned thick hSC slice in a well of a 6-well plate, immersed in
TTC solution. Place in a cell-culture incubator for 30 minutes. Continue with
sectioning while the slice is incubating in TTC. After 30 minutes, check to see if a
red colour change has occurred throughout the grey matter, indicating
mitochondrial activity and slice viability (Hatfield et al., 1991) (Figure 3C). If the
slice does not change colour to red, the tissue is not viable for
electrophysiological recordings. Try once more with another slice, and if no
colour change occurs once more, end the process here.
? Troubleshooting.
21. After the first thick hSC slice, section the hSC at 500µm. When the first 500µm
slice is ready, release it from the agarose block using a number 10 blade and use
the custom dropper to transfer the slice to the prepared custom slice recovery
chamber (Supplementary Figure1) in the heated water bath.
22. Set a running timer. Continue sectioning and placing slices sequentially in the
slice recovery chamber. 40 minutes after the first slice was put in the slice
recovery chamber, use a motorized pipettor to remove approximately 150mL of
34℃ protective aCSF from the 1L beaker and place it in a 300mL petri dish
containing a second, smaller custom slice holder. Move the first slice from the
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first chamber in the second slice holder, and ensure this solution is bubbled with
carbogen. This 300mL petri dish will passively cool to room temperature in
approximately 30 minutes, after which the slice can be used for experiments.
23. Continue sectioning. After transferring the first slice out of the water bath slice
recovery chamber, move one additional, sequential, slice from the water bath slice
recovery chamber to the room temperature recovery using the custom dropper
after each new slice is finished on the vibratome. Note the approximate time it
takes for one slice to finish sectioning.
? Troubleshooting
24. Once you are finished sectioning on the vibratome, set a timer for the amount of
time it took to complete sectioning a slice. When this timer is up, move the next-
oldest slice from the water bath recovery to the room temperature recovery.
Ensure slices remain at room temperature recovery for 30 minutes before starting
experiments.
Note: If you have multiple team members working, you can begin
electrophysiology experiments while one team member continues sectioning and
managing slice recovery.
Electrophysiological Recording
! CAUTION Follow proper safety precautions when working with and disposing of materials
containing human tissues.
Note: If enough team members are present and you have both a patch-clamp rig and hdMEA,
Option A and Option B can run concurrently.
? TROUBLESHOOTING If recordings are not yielding activity, or cease to yield activity,
repeat Step 20 (TTC staining) to check for slice viability with one of the remaining slices.
Option A: Patch-clamp Recording (Timing – 2-8 hours)
25. Pick up a single slice using the custom dropper. Place it in a small petri dish
containing some room temperature, bubbled protective aCSF without kynurenate.
Using straight-edge Vannas dissection scissors, cut the slice in half to separate the
left/right halves of the hSC. Note, if the slice is small enough in diameter to fit in
the microscope well (Figure 4A) beneath your tissue anchor, this step can be
skipped.
26. Place the hSC hemisection in the immersion chamber, filled with bubbled aCSF,
of the patch rig. Secure with tissue anchor, and continuously perfuse with fresh,
bubbled solution throughout experiments.
27. Identify your region of interest under brightfield optics. The substantia gelatinosa
can serve as a useful marker. Note that the anatomy of the hSC differs
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substantially from rodent spinal cord (Toossi et al., 2021). Refer to an atlas if
needed (Sengul et al., 2013).
Option B: hdMEA Recording (Timing – 2-8 hours)
28. Depending on the size of the active recording area on your hdMEA, your hSC
slice will need to be cut to fit into this area. Our preparation uses a 6mm x 6mm
recording area, thus hSC cut into ¼ sections fit well onto the chip. Follow Step 25
above to cut the tissue containing your area of interest to the correct size for your
chip.
29. Couple the tissue to the hdMEA chip. Using a P200 pipettor, remove all solution
from the chip. Place tissue anchor to secure the slice and immediately pipette on
30µL aCSF.
30. Remove the aCSF and then immediately replace on the slice, repeating this step
three times, thus coupling the slice to the active recording area of the chip.
31. Continuously perfuse at a rate of 1-4 mL/minute with fresh, bubbled solution
throughout experiments. Before beginning an experiment, allow the slice to
acclimate on the chip for 15 minutes.
Timing:
Reagent Setup: agarose preparation, internal recording solution preparation, slice external
recording solution (aCSF): 3.5 hours (can be made in advance and kept on hand)
Reagent setup: make protective aCSF, cool, dissolve kynurenate, bubble protective aCSF: 2
hours
Equipment Setup: 1.5 hours
Steps 1 - 9: hSC extraction: 30 – 50 minutes
Steps 10 – 13: Spinal cord microdissection: 30 – 60 minutes
Steps 14 – 24: Tissue sectioning and recovery: 2 – 4 hours
Steps 25 – 31: Electrophysiological recording: 2 – 8 hours
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Troubleshooting:
Table 1. Troubleshooting Guide
Step Problem Possible Reason Solution
5. Sternal saw cannot
span the vertebral
bodies
Large vertebral body
diameter
Use a straight
osteotome to perform
the procedure.
18. Slices are tearing or
lack integrity
This could happen for
a number of reasons –
please match possible
reason with
correspondingly
numbered solution.
1. Tissue is of
insufficient quality to
slice
2. Meninges are
catching the blade
and tearing tissue
3. Glue has wicked in
front of the blade and
is obstructing the
blade
1. The tissue may be
damaged due to the
circumstances
surrounding death of
the donor, or because
of issues with the
tissue extraction.
Review extraction to
ensure that no force
was put on the hSC
sample during
extraction.
2. If another tissue
sample is available,
restart the procedure
with a new hSC
segment and ensure
to carefully remove
ALL roots and
meninges.
3. If another hSC
tissue sample is
available, restart and
ensure a minimal
amount of glue is
used to secure the
hSC on the vibratome
chuck.
was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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20. Slice is not changing
colour to red
following TTC
staining
The sample is
damaged, and no
viable cells remain.
Carefully examine all
previous stages to
determine if
something could have
damaged the hSC
sample. If no reason
is identified, it may
be due to the
circumstances
surrounding the death
of the donor.
23. Cracks emerge in the
hSC sample while it
is mounted to the
specimen plate
Damage during
extraction or
microdissection,
incorrect sectioning
parameters, required
more agarose
support.
If tears or cracks
appear in the hSC
tissue sample while it
is being sliced,
increase the thickness
of the slice to get past
the damaged area.
Slow down the
cutting speed and
ensure a cutting blade
amplitude of 2.75mm
is being used. Ensure
the tissue sample is
being supported by
the agarose block.
25-31 No activity in
recordings
Slices may no longer
be viable
Repeat Step 20 (TTC
staining) to check for
slice viability with
one of the remaining
slices. If no colour
change is observed,
end experiments, as
the tissue is no longer
viable.
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Anticipated results:
Option A: Patch-clamp Electrophysiology
This protocol can be used to prepare tissue for patch-clamp recording (Dedek et al., 2019, 2024).
We patched pain-processing neurons from lamina I of the superficial dorsal horn (SDH;
anatomically the superficial posterior horn in humans), which was identified as being within 50
m medially of tracts that run along the outer edge of the substantia gelatinosa. All slices used
had a clear and bright substantia gelatinosa under brightfield optics. Neurons that were selected
to be patched had smooth surfaces free of blebs and had lightly defined edges (Figure 4B). The
criteria for recording neurons included an access resistance under 30 MΩ and leakage currents
no greater than −100 pA at a holding potential (Vh) of −60 mV (Hildebrand et al., 2014).
Whole-cell patch was established at −60 mV, allowing for the recording α-amino-3-hydroxy-5-
methyl-4-isoxazolepropionic acid (AMPA) receptor-mediated miniature excitatory postsynaptic
currents (mEPSCs) (Figure 4C). AMPAR mEPSC responses from 6 neurons recorded across 4
male and 2 female donors show consistent waveform characteristics (Figure 5Ai). Measuring the
average amplitude (18.44 ± 8.93 pA), 10–90% rise time (0.27 ± 0.26 ms), and decay constants
(2.76 ± 1.78 ms) across the sampled neurons provided insights into the biophysical properties of
these excitatory synaptic responses in the human SDH at −60 mV (Figure 5Aii-iv), with faster
activation and deactivation kinetics compared to that previously observed for rat lamina I
neurons (Hildebrand et al., 2014).
The holding potential was then adjusted from −60 mV to +60 mV to record NMDAR-dominated
mEPSCs. Figure 5Bi illustrates averaged mEPSCs (N = 9 cells) from 5 male and 2 female
donors, displaying decay constants (315.61 ± 144.66 ms), charge transfer values (8.99 ± 2.90
pC), and amplitude measurements (21.72 ± 8.90 pA; N = 9) of saline-treated neurons (Figure
5Bii-iv). These experiments characterized the biophysical properties of NMDAR-mediated
mEPSCs, which is important for understanding the kinetic profile and synaptic function of these
currents in human SDH neurons. This foundational knowledge is critical for linking specific
synaptic properties to functional outcomes.
Option B: hdMEA Recordings
High-density multi-electrode array (hdMEA) recordings are valuable for studying the
electrophysiological properties of populations of neurons in an intact network, allowing for the
high-resolution detection of neuronal activity and comprehensive analysis of spike properties
across multiple sites. Here, we demonstrate the utility of hdMEAs for recording from hSC slices.
In Figure 6A, we show a quadrisected hSC slice mounted on the hdMEA chip, secured with a
tissue anchor to ensure stable recordings. A representative spike trace from the SDH region is
presented, allowing for the detailed assessment of spike amplitude and timing (Figure 6B).
Figure 6C and D display representative activity from the hdMEA channels: saline-treated hSC
tissue exhibited typical spiking activity (Figure 6C), while treatment with 1 μM tetrodotoxin
was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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(TTX) effectively abolished spiking, confirming that the recorded spikes represent neuronal
action potentials (Figure 6D). The ability to capture individual spikes with hdMEAs enables
precise characterization of spike properties and underlying neuronal excitability.
Using the hdMEA system for pharmacological experiments further demonstrates the versatility
of hdMEA recordings for investigating dynamic changes in neuronal activity. We examined the
effects of 2 µM capsaicin versus DMSO vehicle control, as well as the sodium channel blocker
TTX, on the mean firing rate of SDH neurons in hSC slices (Figure 7A). Capsaicin increased
neuronal firing (N = 5 recordings), while the DMSO vehicle did not (N = 2 recordings) (Figure
7B,C). TTX application completely inhibited activity, showcasing the time-course
pharmacological responses over a 35-minute recording session (Figure 7C). The experiments,
conducted using slices from two donors (one male, one female), illustrate the potential of
hdMEAs for testing modulators like brain-derived neurotrophic factor (BDNF), which are known
to drive hyperexcitability in male nociceptive networks of the hSC (Dedek et al., 2019, 2022).
Overall, these tools provide a robust platform for exploring the impact of various agents on
neuronal excitability. This capability is critical for identifying compounds that may inhibit
pathological excitability, offering potential therapeutic candidates, or understanding mechanisms
that exacerbate excitability, shedding light on pathways relevant to pain and other neurological
disorders of the spinal cord.
Author contributions:
E.C.T. developed the surgical approach. A.D. and M.E.H optimized existing tissue preparation
protocols for use in hSC. A.D., R.S., E.G., and M.E.H. collected data. E.T. helped analyze data.
All authors contributed to writing and editing the manuscript and figures.
Acknowledgments:
We thank the organ and tissue donors and their families for their generous, selfless gift. We
thank the Trillium Gift of Life Network, the surgical staff at The Ottawa Hospital Civic Campus
and Dr. Suzan Chen, Lei Zhou, Dr. Ahmad Galuta, Dr. Sara Ameri, Jessica Parnell, and Dr.
Maitreya Patel for their help coordinating human spinal cord collection. Thank you to
Christopher Dedek for his help in troubleshooting the human tissue slice preparation and patch-
clamp electrophysiology.
Competing interests:
The authors report no competing interests.
was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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Figure 1. Schematic of workflow for human tissue preparation for electrophysiology
recording. A) Spinal cord tissue is first harvested from organ donors. B) Tissue is then micro-
dissected before C) sectioning using a vibratome. D) Spinal cord slices are then ready for
electrophysiological analysis using either Di) patch-
clamp or Dii) multielectrode array recording.
Figure created with BioRender.com
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Figure 2. Surgical approach for spinal cord extraction. A) i: Using a straight, wide osteotome
and surgical mallet, the L2 vertebral body is transected, stopping at the spinal canal. ii: the two
incised vertebral bodies are connected by an incision made using a sternal saw. iii: The most
superior vertebral body that is accessible is transected to allow for the removal of the section of
vertebral disk and expose the spinal canal. B) A 45-degree angle must be used in ii, ensuring the
sternal saw clears the vertebral bodies and without damaging the spinal cord beneath. Figure
created with BioRender.com
e
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Figure 3. Spinal cord preparation. A) Tissue microdissection: it is critical to remove all roots,
followed by all meninges prior to sectioning. B) Sectioning tissue on a vibratome, using blocks
of agarose to support the spinal cord. The spinal cord is secured using glue on the anterior side
for examination of the posterior horn (equivalent to the dorsal horn in rodents). C) the first slice
removed during sectioning is placed in a 2% 2,3,5-
Triphenyltetrazolium chloride (TTC) solution
for 30 minutes as a readout of tissue viability before proceeding with experiments.
n
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Figure 4. Patch clamp recording in human spinal cord slices. A) A human spinal cord slice is
secured with a tissue anchor for recording. B) A patch electrode sealed onto a human superficial
posterior horn neuron. C) Representative trace of postsynaptic activity at -60 mV. Scale bars =
1000 ms (x axes), 10 pA (y axes)
is
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Figure 5. Whole-cell patch clamp recording of mEPSCs at -60mV and +60mV. A, B)
Averaged mEPSCs of hSC superficial dorsal horn neurons recorded at -60mV (Ai, n = 6 cells
from 4 male and 2 female donors) and at +60mV (Bi, n = 9 cells, with 7 cells from 5 male and 2
cells from 2 female donors). Scale bars = 10 ms (x axes), 5 pA (y axes). ii-iv) The amplitude, 10-
90% rise time, and decay constant of mEPSCs measured from the corresponding traces.
-
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Figure 6. High-density multi electrode arrays (hdMEAs) can be used to investigate spike
properties of hSC neurons. A) A hSC slice dorsal horn quadrisection mounted on the hdMEA
chip, secured by a tissue anchor, in preparation for recording. B) A representative spike from the
SDH region of a hSC slice. Scale bars: X axis =10ms, Y axis = 20µV. C) and D) Representative
channels in the SDH region from a hSC recording following C) saline-treatment and following
D) TTX-treatment. N = 1; Scale bars: X axis = 50 ms, Y axis = 100µV.
e
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Figure 7. hdMEA recordings can be used for slice pharmacology experiments. A) hSC slice
used for pharmacology experiments (data in C)) showing active channels in the SDH highlighted
in purple. B) Sample traces from select active channels pictured in A) during the control (top)
and after treatment with 2μ M capsaicin (bottom). N =1 Scale bars: X axis = 1s, Y axis = 100µV.
C) Pharmacological experiments showing the effects of 2μ M capsaicin or DMSO vehicle and
1μ M TTX on mean firing rate of hSC SPH neurons. Capsaicin N = 5 recordings, DMSO = 2
recordings; Recordings are from N = 2 donors (1 male, 1 female).
e
ed
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