Material
AND METHODES
Cell culture & cell treatment: MDA-MB-231 (ATCC) and SH-SY5Y (ATCC) cells were maintained at 37 °C
with 5% CO2 in Gibco Dulbecco's Modified Eagle Medium: Nutrient Mixture F12 ( DMEM-F12, GIBCO,
Waltham, MA, USA) supplemented with 10% Fetal Bovine Serum (FBS, Eurobio, Les Ulis, France), 20
mM HEPES (GIBCO, Waltham, MA, USA) , 1X Penicillin streptomycin (GIBCO, Waltham, MA, USA).
Cells are treated with methyl-β-cyclodextrine (MβCD) (MDA-MD-231 5mM, SH-SY5Y 1mM) 48h before
experimentation, or with d,l-threo-l-Phenyl-2-hexadecanoylamino-3-morpholino-1-propanol (PPMP)
(MDA-MD-231 5μM, SH-SY5Y 10μM) for 24h.
Immunofluorescence : Cells were seeded on coverslips , treated 48h with PPMP or 24h with MβCD
before the experiment. After stress treatment, cells are washed quickly with PBS before to be fixed for
15min with 4% Paraformaldehyde (Thermo Scientific, Waltham, MA, USA) in PBS. Cells were then
permeabilized and blocked with IF buffer PBS -0.3% TX100 (Euromedex, Souffelweyersheim, France),
1% Glycine (Sigma, Saint-Louis, MO, USA), 5% Normal Horse Serum (Sigma, Saint-Louis, MO, USA), 5%
Bovine Serum Albumine (Sigma, Saint -Louis, MO, USA) for 30 min at room temperature . Primary
antibodies (Table S1) were diluted in IF buffer and incubated 1 h at room temperature. Coverslips were
washed three times for 5 min with 1X PBS between primary and secondary antibody incubations.
Subsequently, secondary antibodies ( Table S1) were added along with DAPI for 1 h at ro om
temperature in IF buffer. Cells were washed extensively 3 times with 1X PBS and mounted
with ProLong Antifade reagent (Invitrogen, Carlsbad, CA, USA). Pictures were taken with confocal
microscope LEICA LSM880
Western Blot: Following drug(s) treatment(s), cells were washed with phosphate-buffered saline (PBS)
and lysed in RIPA buffer (150mM NaCl, 50mM Tris pH7.4, 1%TritonX100, 0.1% SDS, 1% Sodiun
desoxycholate) with Halt phosphatase and protease inhibitors (Thermo Scientific). Laemmli's sample
buffer supplemented was added to samples to 1X final concentration. Samples were boiled, 5min 95°C
before being loaded on a NuPAGETM 4–12% Bis-Tris gel (Invitrogen) and transferred to nitrocellulose
membrane (GE Healthcare). Membranes were blocked with Tris -buffered saline with 0.1% Tween-20
(TBS-T) with 5% BSA for at least 30 min at room temperature. Antibodies were diluted in 2.5% BSA in
TBS-T. Primary antibodies were incubated overnight at 4°C and secondary antibodies for 1 h at room
temperature; mouse anti G3BP1 antibody (Santa Cruz sc-365338), rabbit anti Caprin -1 antibody
(ProteinTech Group 15112-1-AP), mouse anti puromycin antibody (Millipore MABE342), mouse anti
GAPDH (abcam ab8245) . Antibody detection was performed u sing SuperSignal West Pico
Chemiluminescent Substrate (Thermo Scientific). Revelation of the blot was made using G:BOX
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machine (Syngene) via the GeneSys software. Blot analysis and quantification were done using ImageJ
software.
Statistical Analysis: Statistical analyses were done on 3 independent experiments. Student T -TEST
were performed to compare control to PPMP samples or control to MβCD samples.
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Introduction
Stress granules (SG) are cytoplasmic inclusions that assemble after cells exposition to stress1,12.
Those inclusions composed of proteins and mRNA 1,10 help the cells to overcome stress exposition 2-6.
Indeed, stress exposition induces a global translation repression and direct s untranslated mRNA into
SG13,14. This will 1) protect from stress induced degradation2 and 2) give the translation priority to stress
responsive proteins such as chaperone s13. This action save s energy for the cells 15 and allows the
efficient translation restart as soon as stress is removed2. On top, SG assembly protects cells from cell
death by inhibiting the action of pro -death protein via their recruitment into the structure4-6,8. These
properties prompt researches to investigate the link between SG and human diseases and SG are now
related to several human disorders from neurodegenerative diseases10 to cancer8,9. The control of SG
assembly is mainly studied by up or down regulation of proteins or by finding new drugs for their
induction or inhibition7,11.
The SG regulation in diseases is still under intensive investigation and is directing the research
to unexplored diseases-induced dysregulations. Among them, the contribution of lipid rafts in those
processes have been overlooked. This is a gap since lipids field have unraveled dysregulation in virtually
all human pathologies. More specifically, profound lipid alterations have been observed in cancer and
neurodegenerative diseases and are now known as key features of these diseases 16-19. Additionally,
lipid rafts regulate cell signaling in neuronal cells 20 and cancer cells 21. This evidence that membranes
lipids composition can interfere with cell signaling. In this study we investigate the potential effect of
well-known lipids rafts perturbing drugs of the cell ability to assemble SG.
Results
We chose to investigate the potential regulation of SG by membrane lipids using two cell lines:
MDA-MB-231 (breast cancer cell line) and SH -SY5Y (neuroblastoma cell line). We subjected both cell
lines to an increased concentration of sodium arsenite (SA), a cell stress inductor, to setup a baseline
of sensitivity. To follow SG we follow G3BP1 and Caprin -1, two specific SG markers that colocalize in
cytoplasmic foci 22 (Fig. 1A&B). Each cell line has its own sensitivity, since SH-SY5Y cells start assembling
SG at a lower SA concentration (25 μM) than MDA-MB-231 cells (50 μM) (Fig. 1A&B). Increasing SA
concentration enhances the proportion of SG positive cells in both cell line until reaching the maximum
at 100 μM for MDA-MB-231 (97,5±0,6%) and 50μM for SH-SY5Y (93,4±4,2%).
Then to investigate the role of lipid rafts in SG regulation we took advantage of methyl-β-
cyclodextrine (MβCD) that removes cholesterol from the plasma membrane and d,l-threo-l-Phenyl-2-
hexadecanoylamino-3-morpholino-1-propanol ( PPMP) that interfere s in the ganglioside synthe sis
pathway. Under both treatments, cells had reduced ability to assemble SG regardless cell lines (Fig.
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1A&B). PPMP and MβCD decrease similarly the cell ability to induce SG in SH-SY5Y (PPMP -20,8±2,1%
at 25 μM; MβCD -22,3±5,5% at 25 μM and -15,9±5,2% at 50 μM). No difference for either treatment
under 100μM SA was observed. On MDA-MB-231 PPMP decreases the number of SG positive cells
under 50 and 100 μM SA to 13,7±2,3% and 22,6±7,5% respectively. Whereas MβCD decrease s
drastically the cell ability to assemble SG (-20,0±5,3, 34,9±18,3 and 49,5±18,8% at respectively 50, 100
and 200μM SA).
The cells with altered lipid rafts composition on cholesterol and gangliosides were less likely
to assemble SG. We also investigated if altered lipid rafts composition was able to delay the assembly
of SG at the highest SA concentration. We quantified SG assembly after 15-, 30- and 60-min exposition
to 200 µM SA for MDA-MB-231 cell. On basal condition, where lipid rafts are not altered, SG assembly
started after 15 min of SA exposition (1.9±0.4%) and rapidly increased over time (30 min, 79.6±6.5% ;
60 min 96.8±.08%) (Fig. 2A). SG assembly slowed down when lipid rafts are perturb ed. When
cholesterol is removed under MBCD treatment, no SG are observed after 15 min exposition to 200 µM
SA and only 20.1±10.4% and 57.8±28.8% of cells assembled SG after respectively 30 and 60 min to SA
200 µM (Fig. 2A). When gangliosides pathway is alt ered, the SG assembly kinetic also slowed down
with 0.6±0.6% of SG positive cells after 15 min exposition to 200 µM SA, 52.8±16.5 after 30 min and
83.6±3.6% after 60 min exposition to 200 µM SA (Fig. 2A). For SH-SY5Y cells the assembly does not
start before 30min (data not shown) and follow the same trend as the MDA-MB-231 cells. PPMP delays
the assembly of SG of 45,7±11,5 and 29,7±12,1 and MβCD of 33,3±7,4% and 29,9±3,4% after an
exposition of 30 and 45min to 100 μM SA respectively (Fig. 2B).
To ensure that foci observed under PPMP and MβCD are bona fide SG and not unspecific
aggregagtion12, we subjected cells to puromycin that enhances SG formation by releasing mRNA into
the cytoplasm 23,24 or Cycloheximide (CHX) that inhibit s SG formation by trapping mRNA in the
ribosome24,25 (see Fig. 3A for more detailed explanation on the mechanisms of these drugs ). Without
addition of S A neither the puromycin nor the CHX induce the assembly of SG in any of our samples
(Fig. 3B). Control, PPMP or MβCD treated cells assemble SG under 100 μM SA, and this assembly is
inhibited by the CHX ( Fig. 3C). Meanwhile, SG formation is enhanced by the puromycin treatment in
all cells treated with 50 μM SA (Fig. 3D). The cell response to puromycin and CHX treatment on top of
the double labelling with G3BP1 and Caprin-1 refers to the formation of bona find SG in cells depleted
in ganglioside or cholesterol at the membrane.
SG formation is a well -regulated process. Currently there are two major pathways that could
regulate the formation of SG ; by avoiding the translation repression 26 or by affecting the level of
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expression of the level of expression of the SG core protein G3BP1/2 3,11 (Fig. 4A ). We choose to
investigate both options. First we investigate the translation repression happening following stress
exposure by using the puromyc ylation techni c27. Cells are pulse 5min with low concentration of
puromycin that will incorporate into nascent polypeptidic chain (Fig. 3B&C). Puromycin detection using
a specific antibody will be then representative of active translation. For the control sample the
translation repression occurs already at 50 μM SA, whereas under PPMP and MβCD treatment a higher
dose of SA (100 μM) is required to induce translation repression compared to the pre-stressed sample.
On top, treatment with PPMP and MβCD reduces the G3BP1 global level of expression (Fig. 3B&D.
Discussion
Currently the SG field is still intensively investigating the link between SG and dysregulated
biological process28. Especially how some proteins mutations could affect the assembly and or function
of SG in human pathogenesis. Recent studies show that lipids dysregulation is of growing interest in
the development of human diseases16-19 prompting us to investigate the role of these kind of regulation
in the assembly of SG.
Here we found that cholesterol and gangliosides are key molecules for the fast and efficient
SG formation. Removing cholesterol and decreasing gangliosides levels in plasma membrane of cells
reduces the expression level of G3BP1, one of the key scaffolding proteins for SG assembly11. On top
they also reduce the ability of the cell to induce translation inhibition, the starting point for the SG
assembly cascade 13,29. The combination of the two lead s to the delay in the formation of SG and
reduces sensitivity of cells to stress. As SG are known as pro-survival entities to help cell to overcome
stress exposition/insult4-6,8,30, we speculate that cells via the dysregulation of their lipid composition
within the plasma membrane may become more vulnerable to stress exposition . This is particularly
relevant in the context of neurodegenerative disorders where SG assembly is reduced, and lipid
composition of neuronal cells is profoundly modified 31,32(ref). On the other hands the over-
representation of cholesterol33,34 together with change of gangliosides nature and level in cancer cells17
could increase the ability of cells to answer to stress exposition and provide pro-survival properties to
those cells.
Even if a link between SG formation and lipids droplet formation had already been proven35,
the implication of lipid membrane has never been investigated before. This study put in light that lipids
dysregulation could have an underestimated impact on pro -survival mechanism and therefore being
directly involved in human pathogenesis through SG regulation . The link between SG and lipids will
need further investigation to elucidate the exact mechanism in action and how to counteract them .
This study opens promising perspectives.
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AUTHOR CONTRIBUTIONS
Original idea: AA & CDS. Conception and realization of the experiments and figures: AA. Writing: AA &
CDS. Funding: CDS
ACKOWLEDGMENT
This work has been supported by the Academy of Finland (grants 333096 and 335956) to CDS. We also
thank the HiLIFE fellow program and the Neuroscience Center (University of Helsinki) who supported
CDS as a young group leader.
LEGENDS
Figure 1: Cells with lack of gangliosides and cholesterol at the membrane required higher dose of SA
to induce the assembly of SGs.
A- MDA-MB-231 cells are treated with PPMP (5 μM, 48h) or M βCD (5 mM, 24h) before SG
experimentation. The day of the experimentation cells were treated 1h with SA at the indicated
concentration and collected.
B- SH-SY5Y cells are treated with PPMP (10 μM, 48h) or MβCD (1 mM, 24h) before SG experimentation.
The day of the experimentation cells were treated 1h with SA at the indicated concentration and
collected.
A&B- After collection cells are then fixed and stained with G3BP1 (green), Caprin-1 (red) for SG labelling
and DAPI (bleu) for nuclei visualization before to by imaged using confocal microscopy. Left:
representative pictures. Right: quantifications.
N=3, *p<0,05
Figure 2: Lack of gangliosides and cholesterol at the membrane delay the formation of SGs.
A- MDA-MB-231 cells are treated with PPMP (5 μM, 48h) or M βCD (5 mM, 24h) before SG
experimentation. The day of the experimentation cells were treated with 200 μM SA and collected at
the indicated time.
B- SH-SY5Y cells are treated with PPMP (10 μM, 48h) or MβCD (1 mM, 24h) before SG experimentation.
The day of the experimentation cells were treated with 100 μM SA and collected at the indicated time.
A&B- After collection cells are then fixed and stained with G3BP1 (green), Caprin -1 (red) and DAPI
(bleu) before to by imaged using confocal microscopy. Left: representative pictures. Right:
quantifications.
N=3, *p<0,05
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Figure 3: Foci induced after lipid raft disruption are SGs.
A- Mechanism of action on translation of CHX and puromycin.
CTR) Translation in basal condition: 1. tRNA binds in the A binding site (acceptor). 2. Peptide bond then
forms between the new amino acid and the forming peptide chain in the P (Polypeptide) site.3. The
tRNAs translocate to the E (Exit) site, where the first tRNA can exit the ribosome.
CHX) Inhibition of translation by cycloheximide: When cycloheximide is present, it binds to the E site
of the ribosome. As a result, the translocation step cannot take place and translation stops with the
RNAs being translated blocked in the ribosome. Puro .) Inhibition of translation by puromycin: When
cells are treated with puromycin, the latter integrates with nascent polypeptide chains, stopping
translation and releasing mRNAs and polypeptide chains into the cytoplasm.
B-D- MDA-MB-231 are treated with PPMP (5 μM, 48h) or M βCD (5 mM, 24h) before SG
experimentation. SG experimentation is the indicated combination of CHX (50 μM) or Puromycine (20
μM) and/or Sodium Arsenite (50 μM or 100 μM as indicated) for 1h.Ø: no CHX, no puromycine. CHX:
Cycloheximide. Puro.: Puromycin. SA: Sodium Arsenite. Cells are then fixed and stained with G3BP1
(green), Caprin -1 (red) and DAPI (bleu) before to by imaged using confocal microscopy. Left:
representative pictures. Right: quantifications.
N=3, *p<0,05
B- Cells are treated with CHX, puromycin and compared to untreated samples (Ø) without any SA
addition.
C- All samples are stressed using 100 μM of SA to induce a robust SG response (Ø). CHX is added to
inhibit SG formation.
D- Cells are treated with sub -optimal stress (50 μM) to induce minimum or no SG (Ø). Puromycin is
added to enhance SG formation.
Figure 4: Modification of lipids raft decrease G3BP1 expression level and translation inhibition in
response to stress
A- Under stress exposure, polysome disassemble to allow mRNA to be recruited to SG with proteins.
a- Keeping the translation active will prevent the assembly of SG. b- The downregulation of one of the
two scaffolding protein G3BP1 or G3BP2 will also (partially) prevent the formation of SG.
B-D- MDA-MB-231 MDA-MB-231 are treated with PPMP (5 μM, 48h) or M βCD (5mM, 24h) before to
be exposed to the indicated SA concentration for 1h. 5min before cell lysis, cells were pulsed with
puromycin 5μg/ml.
N=3, *p<0,05, **p<0,001
B- Representative blots.
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C-D- Quantifications. Signal intensity was measured using ImageJ sof tware. Each band intensity was
expression relatively to the GAPDH intensity of the same sample and then expression was plotted
relatively to the untreated sample (CTR, 0μM SA).
C- Puromycin level, representative of general protein expression.
D- G3BP1 expression. All the CTR, PPMP and MBCD treated samples were respectively pulled together
for analysis.
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0
20
40
60
80
100
0 50 100 200
0
20
40
60
80
100
0 12,5 25 50 100
CTR
MβCD
PPMP
*
*
*
* *
*
*
CTR
MβCD
PPMP
SG positive cells (%)SG positive cells (%)
SA concentration (μM)
SA concentration (μM)
*
MDA-MB-231
SH-SY5Y
CTRPPMP
0µM 200µM100µM50µM
50μm
50μm
0µM 100µM50µM25µM
MβCDCTRPPMPMβCD
A
B
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CTRPPMPMβCD
0min 15min 60min30min
50μm
50μm
CTRPPMPMβCD
0min 30min 60min45min
CTR
PPMP
MBCD
0
20
40
60
80
100
0 15 30 60
% SG positive cells
Time (min)
0
20
40
60
80
100
0 30 45 60
% SG positive cells
Time (min)
CTR
PPMP
MBCD
*
*
0,052
*
A
B
*
* *
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0
20
40
60
80
100
CTR
PPMP
MβCD
CTR
PPMP
MβCD
CTR
PPMP
MβCD
Ø CHX Puro.
0μM SA
CTR PPMP MβCD
ØCHXPuro.
50μm
SA 100μm + CHX SA 100μmSA 50μm + puro. SA 50μm
0
20
40
60
80
100
CTR
PPMP
MβCD
Ø CHX
100μM SA
CTR
PPMP
MβCD
0
20
40
60
80
100
Puro.Ø
50μM SACTR
PPMP
MβCD
CTR
PPMP
MβCD
tRNA
Amino Acid
Polypeptidic chain
Ribosome
mRNA
Cycloheximide
Puromycin
E P A E P A E P A
Accomodation Transpetidation Translocation
E P A E P A E P A
E P A E P A E P A
CTR
CHX
Puro.
A
B
C
D
CTR PPMP MβCD
CTR PPMP MβCD
50μm
50μm
*Translation inhibited.
*Inhibition of SG
formation
*Translation inhibited
*Enhancement of SG
formation
* Active translation.
* No SG assembly
SG positive cells (%)SG positive cells (%)SG positive cells (%)
* **
* **
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprintthis version posted March 10, 2025. ; https://doi.org/10.1101/2025.03.04.641411doi: bioRxiv preprint
PonceauαPuromycin
αG3BP1
αGAPDH
250
150
100
75
50
37
25
20
0
50
100
200
CTR
SA (μM)
0
50
100
200
PPMP
0
50
100
200
MβCD
250
150
100
75
50
37
25
20
75
50
37
B
D
C
0.0
0.5
1.0
CTR
PPMP
MβCD
G3BP1 expression
(relative to CTR, 0μM SA)
* **
ProteinsSTRESS
AA
AA
a-Active
translation
b- G3BP1
Down-regulation
Stress
GranulesG3BP1/2
0.0
0.5
1.0
1.5
2.0
CTR PPMP MBCD
0μM
Puromycin signal
(relative to 0μM SA)
**
** ** ** **
**
**
50μM
100μM
200μM
AAAA
A
AA
AA
Translated
mRNA
Untranslated
mRNA
A
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprintthis version posted March 10, 2025. ; https://doi.org/10.1101/2025.03.04.641411doi: bioRxiv preprint