Endometriosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
2025 · doi:10.48533/41qw-xy47 · W7084865180
dataset OA: green CC0
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This document describes an endometriosis phenotype definition within the CALIBER/PhenoFLOW phenotyping framework, specifying that endometriosis is identified in both sexes using ICD-10 and Read v2 codes and includes a defined event date range (01/01/1999–01/07/2016) drawn from NHS data collections. It provides high-level implementation details (phenotype library entry PH162, version 324), along with example API calls for exporting phenotype details and the associated clinical code list. The key finding is essentially the formalization of the endometriosis case definition/coding workflow rather than any biological or clinical results, and the paper text provided does not state performance metrics or validation outcomes. This paper is centrally about endometriosis — it defines an endometriosis phenotype for large-scale electronic health record research.

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Endometriosis PH162 / 324 Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A Oct 6, 2021 Overview Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemICD10 codesRead codes v2Med codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataOntologyNo dataDefinition Implementation Phenoflow ID Please see the PhenoFLOW website here for more information on workflow-based Phenotypes. No dataImplementation Clinical Codelist PUBLISHED PUBLISHED PUBLISHED Publication Related publications Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3 (DOI: 10.1016/S2589-7500(19)30012-3) Citation Example API To Export Phenotype Details: Format API JSON site_root/api/v1/phenotypes/PH162/version/324/detail/?format=json R Package library(ConceptLibraryClient) # Connect to API client = ConceptLibraryClient::Connection$new(public=TRUE) # Get details of Phenotype phenotype_details = client$phenotypes$get_detail( 'PH162', version_id=324 )Py Package from pyconceptlibraryclient import Client # Connect to API client = Client(public=True) # Get details of Phenotype phenotype_detail = client.phenotypes.get_detail( 'PH162', version_id=324 )To Export Phenotype Code List: Format API JSON site_root/api/v1/phenotypes/PH162/version/324/export/codes/?format=json R Package library(ConceptLibraryClient) # Connect to API client = ConceptLibraryClient::Connection$new(public=TRUE) # Get codelist of Phenotype phenotype_codelist = client$phenotypes$get_codelist( 'PH162', version_id=324 )Py Package from pyconceptlibraryclient import Client # Connect to API client = Client(public=True) # Get codelist of Phenotype phenotype_codelist = client.phenotypes.get_codelist( 'PH162', version_id=324 )Version History

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last seen: 2026-05-11T04:35:44.928553+00:00
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