Abstract
Restricted and repetitive behaviors are characteristic of several neurodevelopmental disorders. While
environmental enrichment has been shown to affect these behaviors, the underlying neural mechanisms
remain poorly understood. In this study, we systematically explored the effects of environmental
enrichment on brain structure and microstructure in C58 mice, a model of restricted and repetitive
behaviors, compared to C57 control mice. Using structural magnetic resonance imaging and diffusion-
weighted imaging, we assessed regional brain volumes and microstructural properties and examined
their association with behavioral outcomes. Our results revealed significant reductions in total brain
volume in C58 mice, with region-specific volumetric changes following environmental enrichment
exposure. Importantly, environmental enrichment promoted microstructural plasticity in both strains,
with significant alterations in fractional anisotropy and fiber density. These neuroanatomical changes
were linked to reductions in restricted and repetitive behaviors, with strain- and sex-dependent
effects. Overall, our findings suggest that environmental enrichment remodels brain plasticity at
both structural and microstructural levels, as well as behavior, providing insights into potential
therapeutic approaches through environmental enrichment for neurodevelopmental disorders.
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Introduction
Restricted and repetitive behaviors are hallmark features of various neurodevelopmental disorders, often
emerging during critical periods of brain development [1–4]. These behaviors not only pose significant
challenges to affected individuals and their families, but they also offer a unique window into the underlying
neural mechanisms that govern brain organization and plasticity [5–11]. Understanding the brain’s structural
and functional abnormalities that contribute to restricted and repetitive behaviors is critical, as these patterns
reflect disruptions in the neural circuits associated with brain disorders, both in terms of their pathophysiology
and the mechanisms driving problematic behavior.
Mouse models, such as the C58 strain, provide a valuable platform for investigating the relationship between
brain organization and behavior in the context of restricted and repetitive behaviors [12–16]. Previous studies
have identified both global and regional brain differences between C58 mice and control strains [17,18], but
the relationship between these structural variations, brain volume, microstructure, and behavior remains
unclear. Additionally, a recent study showed that an enriched environment reduced restricted, repetitive
behaviors in C58 mice, with these changes linked to alterations in gray matter microstructure [6]. However, the
effects of such interventions on brain volume, white matter microstructure, and behavioral flexibility remain
poorly understood. This study aims to comprehensively and systematically investigate how environmental
enrichment affects brain architecture and white matter plasticity, and whether these changes contribute to
modulating behavioral flexibility.
In this study, we combined structural magnetic resonance imaging and diffusion-weighted imaging to quantify
brain volume and microstructural features in C58 mice and C57 controls under standard housing and
environmental enrichment conditions, taking sex into account. We systematically examined the impact of
environmental enrichment on brain structure and microstructural plasticity, and investigated the relationship
between these neuroanatomical measures and restricted and repetitive behaviors. This approach provides a
framework for linking environmental interventions, brain structural and microstructural plasticity, and the
modulation of restricted and repetitive behaviors.
Results
Significant Reduction in Total Brain Volume in Restricted Repeated C58 Mouse
Model
Twenty-six C57BL/6J (C57) mice served as the control group, while thirty-three C58/J (C58) mice were
used as the model for restricted repeated behavior (Fig.1A). Structural brain images were acquired using
high-resolution T2-weighted MRI at 11.1T, and then registered to the Allen Mouse Brain Common Coordinate
Framework (CCFv3) atlas (Supplementary Figure S1) [19]. To quantify total brain volume (TBV) and
obtain subject-level anatomical annotations, the registered images were subsequently transformed back into
native space, with a voxel resolution of 0.059× 0.059 × 0.9 mm³(Fig.1B).
We observed a notable decrease in TBV in the restricted repeated C58 mouse model (Fig.1C). The mean
TBV for the control C57 mice was 451.50± 3.45 mm³, while the mean TBV for the C58 mice was significantly
reduced to 391.74± 4.90 mm³(***p<0.001). This represents a mean decrease of approximately 13.24%.
The reduction in TBV was consistent across multiple groups (Fig.1D), suggesting that the reduced brain
volumetrics represent a reliable and reproducible effect in the C58 mouse model, likely attributable to genetic
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Figure 1: Brain volume quantification in C57 and C58 mice under different housing conditions.
A. Structural MRI (sMRI) data were acquired at 11.1 T from C57BL/6J (C57; female and male) and C58/J
(C58; female and male) mice housed under different experimental conditions.
B. sMRI images were registered to the CCFv3 mouse brain atlas, and atlas annotation labels were subsequently
mapped back to individual native T2-weighted space using inverse transformations. The voxel resolution was
0.059 × 0.059 × 0.9 mm 3.
C. Total brain volume (TBV) comparisons between strains were assessed using two-samplet-tests. ***
indicates p < 0.001.
D. TBV statistics across experimental groups. * indicatesp < 0.05; ** indicates p < 0.01; *** indicates
p < 0.001.
E. Regional brain volume comparison across experimental groups. Volumes from 32 selected regions (out of
382 atlas-defined regions) are shown.
F.Comparison of major cortical region volumes across experimental groups.
G.Comparison of major subcortical region volumes across experimental groups.
H. Spatial maps of selected cortical and subcortical regions displayed in CCFv3 template space for anatomical
reference.
I. Pairwise t-test p values for hypothalamic volume comparisons across experimental groups. Significant
differences are indicated (*p <0.05; **p < 0.01; ***p < 0.001).
factors. Notably, this reduction was observed regardless of the specific experimental housing conditions
(standard housing vs. environmental enrichment) or sex variations (female vs. male), underscoring the
robustness of the finding.
The magnitude of this reduction indicates that the C58 strain exhibits substantial alterations in brain
morphology. Moreover, the statistical significance of this decrease (***p<0.001) confirms that these changes
are unlikely to result from random variation and instead represent a genuine biological effect in the C58
mice.
Environmental Enrichment Does Not Significantly Affect Total Brain Volume in
C57 and C58 Mice
To investigate the effect of environmental enrichment on TBV, mice from both C57 and C58 strains were
assigned to either standard housing (SH) or enriched environment (EE) conditions, with males and females
analyzed separately (C57-EE-Female, C57-EE-Male, C57-SH-Female, C57-SH-Male, C58-EE-Female, C58-
EE-Male, C58-SH-Female, C58-SH-Male). Analysis of TBV revealed no statistically significant differences
between enriched and standard housing conditions in either the C57 or C58 mice, regardless of sex (Fig.1D).
These results indicate that, under the conditions tested, environmental enrichment does not have a measurable
impact on TBV in either mouse strain.
Environmental Enrichment Significantly Affects Region-Specific Brain Volume in
C57 and C58 Mice
Regional brain volume analysis was conducted in 382 annotated brain regions to assess the effects of
environmental enrichment in C57 and C58 mice (Supplementary Figures S2-S5). Among these, 32 regions
were selected for illustration and visualization based on their relevance and their role in representing both
cortical and subcortical regions (Fig.1E). The aggregated representative cortical regions (anterior cingulate
area, frontal pole, olfactory areas, orbital area, primary auditory area, primary somatosensory area, primary
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visual area, retrosplenial area and corpus callosum;Fig.1F) and subcortical regions (hippocampal formation,
hypothalamus, pallidum, striatum and thalamus;Fig.1G) were analyzed to assess broader anatomical effects.
Spatial maps of these representative cortical and subcortical regions were also visualized in the standard
mouse brain space to illustrate their anatomical localization (Fig.1H).
As a representative region, the hypothalamus was selected for detailed comparison (Fig.1I). In this region, a
significant difference in brain volume was observed between C57-EE-Male and C57-SH-Male mice (*p<0.05),
indicating an effect of environmental enrichment within the C57 strain. Additionally, a significant difference
in hypothalamic volume was detected between C57-EE-Male mice and both C58-EE-Male and C58-EE-
Female groups (*p<0.05), suggesting a strain-dependent difference in regional brain volume under enriched
environmental conditions.
Additional comparisons revealed significant differences in hypothalamic volume between C57-EE-Male mice and
C58-SH-Female mice (**p<0.01), as well as between C57-EE-Male mice and C58-SH-Male mice (***p<0.001).
Collectively, these results indicate that environmental enrichment is associated with region-specific differences
in brain volume and that the pattern of these differences varies between C57 and C58 strains.
In addition, we examined the hippocampal formation, striatum, pallidum, and somatosensory areas, as these
regions (Fig.2A) have been identified as components of neural circuits involved in restricted and repetitive
behaviors (RRB) [3,4, 8]. In the somatosensory areas (Fig.2B), significant differences were observed between
C57-SH-Male and C58-EE-Female mice (*p<0.05), as well as between C58-EE-Female and C58-SH-Male
mice (*p<0.05), indicating that both strain (C57 vs. C58) and housing condition (standard vs. enriched)
are associated with distinct regional brain volumes. In the hippocampal formation (Fig.2C), significant
differences were detected between C58-EE-Female and C58-EE-Male mice (*p<0.05), indicating a potential
sex-dependent effect. In the striatum (Fig.2D), significant differences were observed between C57-EE-Male
and C58-SH-Male mice (*p<0.05), suggesting that both genetic background and environmental enrichment
may influence striatal structure. In the pallidum (Fig.2E), C57-EE-Female mice showed significant differences
compared with C57-SH-Female (*p<0.05), C58-EE-Female (*p<0.05), and both C58-SH-Female (*p<0.05)
and C58-SH-Male mice (**p<0.01). These findings demonstrate that environmental enrichment and strain,
as well as sex in some cases, are associated with significant regional differences in brain volume in areas
implicated in RRB circuits.
Environmental Enrichment Significantly Attenuates Restricted and Repetitive
Behaviors in a Strain- and Sex-Dependent Manner
We observed that EE significantly reduced RRB, as quantified by the number of vertical jumps, in both
C57 and C58 strains. Importantly, the effect of EE was more pronounced in C58 mice compared to C57,
indicating a strain-dependent response to enrichment (Fig.2F). Furthermore, Post-hoc multiple comparisons
for the treatment factor (SH vs. EE) confirmed that RRB was significantly lower in EE mice relative to
SH controls (***p < 0.001) (Fig.2G), supporting the conclusion that environmental enrichment effectively
attenuates repetitive behaviors across both strains.
In addition, a three-way factorial ANOVA was performed to assess the effects of strain (C57 vs. C58),
treatment (SH vs. EE), and sex (Female vs. Male), as well as their interactions, on the measured outcome
(Fig.2H). The analysis revealed significant main effects of strain (F1,51 = 60.76, ***p < 0.001) and treatment
(F1,51 = 59 .77, ***p < 0.001), indicating that both genetic background and environmental enrichment
independently influenced the behavior. A significant main effect of sex was also observed (F1,51 = 6 .55,
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*p= 0.0135), suggesting differences between male and female mice.
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Figure 2: Brain volume, behavior, and brain-behavior relationships in C57 and C58 mice across
experimental groups.
A.Spatial maps of selected brain regions rendered on a standard 3D mouse brain.
B.Pairwise t-test p values for somatosensory volume comparisons across experimental groups.
C. Pairwise t-test p values for hippocampal formation volume comparisons across experimental groups.
D. Pairwise t-test p values for striatum volume comparisons across experimental groups.
E. Pairwise t-test p values for pallidum volume comparisons across experimental groups.
F. Behavioral comparisons across experimental groups.
G. Behavioral comparisons across housing conditions.
H. Three-way factorial ANOVA of behavioral measures.
I. Representative correlations between regional brain volumes (supplemental somatosensory area) and
behavioral measures across experimental groups. Correlation and p-values are reported for each group.
Importantly, the interaction between strain and treatment was significant (F1,51 = 14 .90, ***p = 0 .0003),
demonstrating that the effect of environmental enrichment differed depending on the mouse strain. The
strain × treatment × sex interaction was also significant (F1,51 = 9 .74, **p = 0 .003), indicating that the
combined effect of strain and treatment on the outcome varied between sexes. No significant interactions
were observed for strain× sex (p = 0.1357) or treatment× sex (p = 0.2188), suggesting that these two-way
interactions alone did not contribute substantially to outcome variability.
Collectively, these results indicate that both genetic background and environmental enrichment strongly
influence the measured behavior, with the magnitude and direction of enrichment effects depending on strain
and sex. This underscores the importance of considering strain-specific and sex-dependent responses when
evaluating behavioral interventions.
Environmental Enrichment Modulates Correlations Between Regional Cortical
Brain Volume and Restricted and Repetitive Behaviors
One representative brain region, the supplementary somatosensory area (part of the somatosensory cortex),
exhibited a significant negative correlation between regional brain volume and RRB in C58 Male mice after
EE (ρ = −0.87, **p = 0.004) compared to control groups (Fig.2I).
Interestingly, in both C57 and C58 control strains, regardless of sex, TBV showed an inverse relationship with
RRB. Specifically, in strain C57, smaller brain volumes were associated with lower RRB. while in strain C58,
smaller brain volumes corresponded to higher RRB. This pattern is consistent with previous observations
that C58 mice exhibit lower total brain volume and higher RRB.
Following EE, the correlation between cortical brain volume and RRB remained largely unchanged in
C57 mice, but in C58 mice, particularly males, EE altered this relationship, indicating that enrichment
can remodel the association between regional cortical brain volume and behavioral output. However, no
significant correlation was observed between regional subcortical brain volume and RRB between experimental
groups (Supplementary Figures S6-S7). These findings suggest that, while EE affects brain structure,
it specifically modulates the relationship between the anatomy of the regional cortical brain and repetitive
behaviors, without a similar effect on the subcortical regions.
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Spatial Distribution of Diffusion Metric Maps in C57 and C58 Mice under
Different Housing Conditions
To further quantify brain structure at the microstructural level, diffusion metric maps were estimated in C57
and C58 mice under different housing conditions. Following tensor fitting of preprocessed diffusion-weighted
imaging (DWI) data, four diffusion metrics were derived: axial diffusivity (AD), mean diffusivity (MD),
Figure 3: Diffusion metric maps derived from diffusion-weighted images in C57 and C58 mice.
A. Diffusion-weighted images and the corresponding white matter diffusion metrics estimated using diffusion
tensor fitting to quantify white matter microstructural integrity, including axonal and myelin integrity, as
assessed by AD, MD, RD, and FA.
B.Representative maps of AD, MD, RD, and FA across experimental groups.
C.Subject-level color-coded FA maps.
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radial diffusivity (RD), and fractional anisotropy (FA). These metrics provide complementary information
about white matter integrity and microstructural organization (Fig.3A). Specifically, AD serves as a proxy
for axonal coherence and potential axonal damage, MD reflects overall cellular and neurite density, RD
provides an index of axonal myelination and dendritic architecture, and FA captures axonal density and
coherence. The estimated diffusion metrics were computed for all experimental groups and registered to the
CCFv3 template space (Fig.3B). Subject-level FA maps were visualized spatially to illustrate microstructural
patterns and were subsequently used for downstream statistical analyses and group comparisons. Together,
these four diffusion metrics provide a comprehensive characterization of microstructural brain properties
across different housing conditions.
Diffusion Metric Maps Reveal Sex- and Housing-Dependent Microstructural
Differences Between C57 and C58 Mice
We observed that the C58 strain exhibited consistently lower diffusion metric values compared with the
C57 strain. FA was significantly reduced in C58 mice relative to C57 mice (**p < 0.01), independent of
housing condition and sex (Fig.4A). These findings suggest strain-dependent differences in white matter
microstructural organization, potentially reflecting reduced axonal density or decreased fiber coherence in the
C58 strain.
Across individual experimental groups, significant differences in FA were detected between C57-EE-Female
and C58-SH-Female mice (*p < 0.05), as well as between C57-SH-Male and C58-SH-Female mice (*p <
0.05) (Fig.4B). This pattern indicates that the effects of strain on white matter integrity may interact with
housing conditions and sex, underscoring the combined influence of genetic and environmental factors on
diffusion properties.
For AD, MD, and RD, no significant differences were observed between the C57 and C58 strains at the
whole-strain level (Figs.4C,E,G,Supplementary Figure S8). However, analysis of individual experimental
groups revealed that C58-EE-Female mice exhibited significantly lower AD values compared with C57 mice,
independent of housing conditions and sex (*p < 0.05) (Fig.4D). In addition, C58-EE-Female mice showed a
significant difference in AD relative to C58-EE-Male mice (*p < 0.05). Because AD is commonly considered
a proxy for axonal integrity and coherence, these findings suggest that axonal microstructure is differentially
affected in C58-EE-Female mice compared with both same-strain male counterparts and C57 mice, highlighting
the combined influence of strain, sex, and environmental enrichment on axonal organization. A similar
pattern was observed for MD (Fig.4F), which reflects overall tissue diffusivity and is also sensitive to cellular
and neuronal density, further supporting sex- and enrichment-dependent microstructural differences. Finally,
C57-EE-Female mice exhibited significantly greater RD values compared with C58-EE-Female mice (*p <
0.05) (Fig.4H), suggesting that following EE, C58 mice may exhibit reduced axonal myelination or decreased
dendritic branching than C57 mice exposed to the same EE treatment.
Fractional Anisotropy Correlates with Restricted and Repetitive Behaviors
FA, a measure of the directional coherence of water diffusion in white matter, showed a significant negative
correlation with RRB (ρ = −0.30, *p = 0.020) (Fig.4I), suggesting that higher RRB scores are associated
with lower FA values. This finding indicates a potential link between alterations in white matter microstructure
and the expression of RRB. In contrast, no significant correlations were found between other diffusion metrics,
such as AD (
ρ = 0.00, p = 0.977) (Fig.4J), MD (r = 0.03, p = 0.833) (Fig.4K), and RD (r = 0.07, p = 0.619)
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(Fig.4L), with RRB, suggesting that FA, but not the other diffusivity measures, is particularly sensitive to
the neural changes associated with RRB.
These findings suggest that alterations in axonal integrity, as reflected by FA, may play a key role in the
neural mechanisms underlying RRB. Reduced FA may indicate disruptions in axonal coherence, potentially
leading to abnormal connectivity between brain regions involved in the expression of RRB. Furthermore, given
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Figure 4: Brain diffusion metrics and their relationships with behavior in C57 and C58 mice
across experimental groups.
A.Fractional anisotropy (FA) comparisons across experimental groups and strains.
B.Pairwise t-test p values for FA comparisons across experimental groups.
C. Axial diffusivity (AD) comparisons across experimental groups.
D. Pairwise t-test p values for AD comparisons across experimental groups.
E. Mean diffusivity (MD) comparisons across experimental groups.
F. Pairwise t-test p values for MD comparisons across experimental groups.
G. Radial diffusivity (RD) comparisons across experimental groups.
H. Pairwise t-test p values for RD comparisons across experimental groups.
I. Correlations between FA and behavioral measures across experimental groups. Significant associations are
indicated (*p < 0.05).
J. Correlations between AD and behavioral measures.
K. Correlations between MD and behavioral measures.
L. Correlations between RD and behavioral measures.
the negative correlation between FA and RRB, it is plausible that reduced axonal integrity or myelination
could impair the flexibility of neural circuits, contributing to the rigidity and repetitiveness observed in
these behaviors. However, the lack of significant correlations between AD, MD, and RD with RRB suggests
that these diffusion measures, which are less specific to axonal integrity, may not capture the nuanced
microstructural changes that are more closely related to the expression of RRB.
Figure 5:Fiber tractography analysis in C57 mice.
Fiber tractography was performed in C57 mice (female and male) under standard housing and environmental
enrichment conditions.
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Environmental Enrichment Increases Fiber Density in C57 and C58 Mice
Fiber tractography analysis shows that EE has a stronger effect on brain fiber density in C57 mice, with a
clear increase in fiber density compared to C57 SH control mice (Fig.5). This result suggests that EE can
significantly enhance brain plasticity. In C57 mice, which serve as a standard control strain, exposure to EE
appears to facilitate axonal growth and myelination, as evidenced by the increased fiber density observed in
the white matter tracts.
Figure 6:Fiber tractography analysis in C58 mice.
Fiber tractography was performed in C58 mice (female and male) under standard housing and environmental
enrichment conditions. Major fiber tracts showing group differences were segmented for clearer visualization
and comparison.
The same phenomenon was also observed in C58 mice (Fig.6A,Supplementary Figure S9 ). Under EE
housing conditions, these mice exhibited a clear increase in brain fiber density (Fig.6B), similar to the
C57 strain . This suggests that, despite potential strain-specific differences in baseline brain structure, both
C57 and C58 mice are capable of exhibiting enhanced brain plasticity in response to enriched environments.
The increase in fiber density under EE conditions in C58 mice may indicate that environmental enrichment
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promotes axonal growth, myelination, and overall structural reorganization in these animals, just as it does
in the C57 strain.
Environmental Enrichment Remodels Brain Plasticity and Mitigates Restricted
and Repetitive Behaviors
EE was shown to drive changes in TBV and regional volumes in a sex-dependent manner, with significant
alterations observed in both cortical and subcortical regions. These structural changes were found to correlate
with the expression of RRB. Additionally, EE appears to induce alterations in brain microstructure, which
were linked to shifts in RRB expression. These findings suggest that environmental enrichment plays a
critical role in shaping brain plasticity and its functional outcomes, influencing both structural and behavioral
domains in C58 mice (Fig.7).
Figure 7:Environmental enrichment remodels brain structural plasticity and behaviors.
Environmental enrichment remodels brain structural plasticity and alters restricted and repetitive behaviors;
however, many underlying mechanisms remain to be fully understood.
However, these results only represent the tip of the iceberg in understanding the full scope of structural and
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functional plasticity in the brain. While we have identified correlations between EE, brain structure, and
behavior, the underlying mechanisms, such as how structural changes in brain networks reshape function
and contribute to RRB, remain to be fully elucidated. Much work remains to explore the genetic factors
that may mediate these plasticity changes and to clarify how these structural adaptations are linked to more
refined neural circuits involved in RRB expression. Additionally, understanding the transition from preclinical
animal models to clinical applications will be crucial for translating these findings into therapeutic strategies
for brain disorders.
Discussion
EE exerts a profound influence on brain structure, promoting sex-dependent neural and behavioral plasticity.
In this study, we demonstrated that EE induces significant changes in both brain structure and microstructure
in C58 mice, a model of RRB, when compared to C57 control mice. These neuroanatomical changes, including
region-specific volumetric remodeling and alterations in microstructural measures like FA and fiber density,
were closely linked to modifications in RRB expression. The strain- and sex-dependent effects observed
underscore the complexity of environmental interventions and their differential impacts on brain plasticity.
Remarkably, while C58 mice exhibited significant reductions in brain volume compared to C57 controls,
exposure to EE was associated with microstructural plasticity. This suggests that structural changes at both
the macro and micro levels may underlie the observed behavioral improvements. These findings offer new
insights into the neural mechanisms that may mediate the effects of EE in modulating behavioral deficits in
neurodevelopmental disorders.
Speaking from a brain volume assessment perspective, the reduced TBV observed in C58 mice compared to
C57 controls is consistent with previous studies linking brain disorders to altered brain morphology [20–22].
Importantly, our findings indicate that while EE did not significantly alter TBV, it did induce region-specific
volumetric changes. These changes in brain volume were associated with reductions in RRB, suggesting that
EE may influence brain structure in ways that support more flexible, adaptive behaviors. The relationship
between brain volume and behavior underscores the importance of considering structural changes when
exploring the neural mechanisms underlying RRB. Although TBV may not be directly modifiable by EE,
the region-specific volumetric alterations seen in response to environmental interventions highlight the
dynamic nature of brain plasticity and its potential to mitigate behavioral abnormalities associated with
neurodevelopmental disorders.
Speaking from a microstructural assessment perspective, the correlation between FA and RRB likely reflects
the critical role of white matter in supporting the efficiency and organization of neural networks [23–25].
White matter, primarily composed of myelinated axons, connects different brain regions, and FA serves as a
marker of both axonal myelination and fiber tract coherence [26]. Myelination facilitates faster and more
efficient signal transmission, while fiber coherence ensures the alignment of axonal fibers in a specific direction,
which is essential for maintaining effective communication between brain regions [27]. In the context of
RRB, disruptions in either of these processes may lead to impaired neural processing, particularly in brain
regions involved in executive functions, sensory integration, and motor coordination. Reduced FA in these
regions could disrupt the balance between inhibitory and excitatory signals, contributing to the rigidity and
inflexibility characteristic of RRB [28].
Moreover, the absence of significant correlations between other diffusion metrics, such as AD, MD, and RD,
and RRB suggests that these measures may not adequately capture the specific changes in myelination and
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fiber coherence most relevant to RRB. AD and RD, which reflect parallel and perpendicular diffusion [29],
respectively, may be less sensitive to alterations in axonal structure and organization that influence higher-
order behaviors such as RRB. Additionally, the increase in fiber density observed in C57 mice after EE further
supports the notion that EE promotes neural plasticity, promoting axonal growth and enhanced connectivity
in the brain. This effect appears to be strain-specific, and C57 mice showed a particularly robust response to
EE, which may provide insight into how EE can shape brain structure and function. In general, these findings
underscore the importance of microstructural changes in brain white matter as a key factor in modulating
complex behaviors such as RRB, highlighting the potential of environmental interventions to promote neural
reorganization in neurodevelopmental disorders.
One limitation of the present study is that we exclusively used adult C58 mice and C57 controls. While
this allowed us to characterize the relationship between brain structure, microstructure, and RRB at a
mature stage, it precludes insights into the developmental trajectory of these behaviors and the underlying
neural mechanisms [30]. Future studies incorporating multiple developmental stages would provide a more
comprehensive understanding of how brain architecture and plasticity evolve in relation to repetitive behaviors.
Such an approach would also allow for a more detailed investigation of how EE influences brain development
and the emergence of RRB across early life stages, potentially revealing critical windows for intervention [31,
32].
A further consideration is the potential benefit of aligning mouse developmental stages with equivalent human
lifespans to better model the emergence and progression of neurodevelopmental traits [33]. By including
multiple ages, we could examine how RRB and associated brain plasticity evolve across development, providing
a richer framework for understanding critical periods. Cross-species comparisons between mice and humans
would also enhance translational relevance, bridging preclinical findings to clinical contexts. Such an approach
is particularly valuable for disorders like autism spectrum disorder [1, 4, 7, 34], where developmental timing
and environmental influences play a central role in shaping neural circuitry and behavior [35]. Future studies
that integrate developmental timing and cross-species analyzes could, therefore, provide critical insights into
the mechanisms underlying RRB.
In addition, the present study is limited by the use of a single-shell diffusion-weighted imaging acquisition
with a b-value of 1,000 s/mm2. Although this approach is well suited for diffusion tensor imaging and yields
robust estimates of standard diffusion metrics, it provides limited sensitivity to more complex aspects of tissue
microstructure [36,37]. In small-animal imaging, higher b-values or multi-shell diffusion protocols can enhance
sensitivity to restricted diffusion and support advanced microstructural modeling [37,38]. Future studies
employing higher b-values or multi-shell acquisitions may therefore offer a more detailed characterization of
microstructural alterations associated with RRB and the effects of EE.
In summary, this study shows that EE remodels brain structure and behavioral plasticity, emphasizing
that the environment plays a crucial role in shaping brain development and health. However, these results
merely scratch the surface of the complex interplay between structural and functional plasticity in the brain
(Fig.7). Much more work is needed to unravel the genetic factors that govern these plasticity changes. A
deeper understanding of how specific genes and molecular pathways mediate the brain’s adaptive responses
to environmental stimuli will be essential [39]. Furthermore, the link between structural alterations and the
refinement of neural circuits involved in RRB remains to be fully elucidated. This includes examining how
cellular changes, such as alterations in neuronal connectivity, synaptic plasticity, and signal transduction
pathways, contribute to the emergence or mitigation of RRB. In addition, bridging the gap between preclinical
animal models and human clinical applications is critical.
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Materials and methods
Animals
All procedures were approved by the Institutional Animal Care and Use Committee at the University of
Florida (protocol #202011229) and adhered to the National Institutes of Health Guide for the Care and Use
of Laboratory Animals, ensuring the ethical and humane treatment of all animals throughout the study. MRI
data from anesthetized mice have been previously published [40].
A total of 59 mice were included in the study, with 30 assigned to the EE condition and 29 to the SH
condition (Table 1). The EE group comprised equal numbers of female and male mice (50% each), while
the SH group included 17 females (58.6%) and 12 males (41.4%). Both treatment groups contained mice
from the C57BL/6J (C57, control mice) and C58 strains, with comparable distributions across conditions. In
the EE group, 46.7% of mice were C57 and 53.3% were C58, whereas in the SH group, 41.4% were C57 and
58.6% were C58.
Table 1: Mouse cohort characteristics by treatment group
Characteristic EE (n = 30) SH (n = 29)
Sex, n (%)
Female 15 (50.0) 17 (58.6)
Male 15 (50.0) 12 (41.4)
Mouse strain, n (%)
C57 14 (46.7) 12 (41.4)
C58 16 (53.3) 17 (58.6)
Housing Conditions
The C58 mouse strain is an inbred line known to spontaneously display high levels of repetitive motor
behaviors, while the closely related C57 strain does not typically show such behaviors when housed under
either standard or enriched conditions [6,41]. Mice were housed in same-sex groups of three to six animals.
SH consisted of shoebox-style plastic cages (29× 18 × 13 cm) containing bedding and two nestlets for
nest building. EE housing involved placement in large dog kennels (122× 81 × 89 cm) equipped with two
elevated platforms connected by ramps, running wheels, a shelter, bedding, four nestlets, habitrail tubes,
and assorted plastic toys that were rotated biweekly to maintain novelty. In addition, EE kennels received
bird seed (2 oz) scattered throughout the enclosure weekly to provide an opportunity for natural foraging
behavior. In contrast, SH cages received the same amount of bird seed placed as a dietary supplement in a
cage corner.
All animals had unrestricted access to food and water and were maintained on a 12:12 h light–dark cycle in a
temperature-controlled room (70–75°F). Mice remained in their assigned housing conditions for six weeks (42
days) prior to behavioral testing. At the onset of testing, EE mice were relocated to enriched standard cages
consisting of shoebox-style plastic cages with bedding and two nestlets, supplemented with a small running
wheel, a plastic shelter, a habitrail tube, and one toy.
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Behavioral Phenotyping
Repetitive motor behaviors in adult mice were assessed six weeks after weaning using automated photobeam
arrays to record the total number of vertical movements per dark cycle for each animal. During testing, mice
were housed in individual test cages with food and water available ad libitum. All tests were performed
during the 12-hour dark cycle. Automated recordings were validated by trained observers in a subset of video
recordings.
Data Acquisition
Mice were anesthetized for MRI acquisition using a combination of low doses of isoflurane and dexmedetomidine
as previously described [6], and lubricating eye ointment was applied to prevent corneal drying. During
scans, mice were positioned prone in a custom cradle with a bite bar and warm-water circulation to maintain
body temperature at 36–37°C. Respiration was monitored with a pressure pad. Animals who had difficulty
recovering from anesthesia received an intraperitoneal injection of atipamezole (0.1 mg/kg).
MRI imaging was performed at the Advanced Magnetic Resonance Imaging and Spectroscopy facility at the
University of Florida using a 11.1 T scanner (Magnex Scientific) with an Advance III Bruker Paravision 6.01
console and a custom2 × 2.5 cm quadrature surface coil. Each session included a T2-weighted anatomical
scan and a diffusion-weighted scan. T2-weighted images were acquired using a TurboRARE sequence (TE
= 41 ms, TR = 4 s, RARE factor= 16, 12 averages) with a field of view of15 × 15 × 12.6 mm, resolution
of 58.6 × 58.6 × 900 µm, and 14 interleaved slices covering the entire brain (acquisition time∼ 9 min 36 s).
Diffusion-weighted images (DWI) were acquired using a four-shot 3D spin echo sequence (TR= 4 s, TE
= 16 ms) with a field of view of17.5 × 15 × 16.25 mm, matrix 70 × 60 × 65, and 0.25 mm isotropic resolution.
A single-shell diffusion scheme was used with 20 directions (fourb = 0 s/mm2, twentyb = 1, 000 s/mm2) over
a scan time of 19 min 12 s.
MRI Data Preprocessing
For each subject, T2-weighted anatomical images were skull-stripped to isolate the brain. Images were
processed using a three-dimensional Pulse-Coupled Neural Network (PCNN3D) [42] with a structural radius
of 12 and voxel dimensions obtained from the image header. The resulting binary masks were reconstructed
into 3D volumes, saved, and applied to the original images usingfslmaths to generate brain-only scans.
Skull-stripped T2-weighted images were first reoriented to standard orientation usingfslreorient2std to
ensure consistent alignment across subjects. A downsampled P56 Allen Mouse Brain Atlas [19] were used
as the reference space. Each subject’s reoriented T2 image was then registered to the template using a
combined SPM and ANTs [43] pipeline, generating transformations to align individual anatomy to the atlas
space. Orientation, dimensionality, and file integrity were verified prior to registration to ensure accurate
mapping.
DWI were first skull-stripped and aligned to the anatomical scans. The initial b0 volume was extracted from
each DWI dataset usingfslroi. The skull-stripped T2-weighted image was then registered to this b0 volume
with flirt [44] (six degrees of freedom), and the resulting transformation matrix was applied to the anatomical
brain mask. The transformed mask was used to skull-strip the DWI data withfslmaths, generating clean,
brain-only diffusion images. Subsequent preprocessing included noise estimation and denoising, correction
for motion and eddy current distortions, producing high-quality DWI volumes suitable for downstream
analyses.
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Brain Volume Estimation
Whole-brain and regional volumetric analyses were conducted using high-resolution, standardized T2-weighted
MRI. Total brain volume was determined by summing all voxels within the brain mask and multiplying
by the voxel volume (0.059 × 0.059 × 0.9 mm3). Regional volumes were quantified for 382 anatomically
defined structures, enabling detailed assessment of structural differences across the brain. Group-level
means and standard deviations were aggregated for each region, and high-level cortical and subcortical
regions were generated by pooling substructures (Supplementary Figure S1). Statistical comparisons were
conducted using pairwise two-sample t-tests with significance thresholds set atp<0.05 (*), 0.01 (**), and
0.001 (***).
Restricted and Repetitive Behavior (RRB) Analysis
RRB was quantified as the frequency of vertical jumps per night and assessed across mouse strain, housing
condition, and sex. Data were log-transformed (log10[RRB]) to correct for skewness prior to statistical
analysis. A three-way factorial ANOVA [45] was performed to evaluate main effects and interactions of strain,
treatment, and sex on RRB. Post-hoc pairwise comparisons were conducted using Tukey’s honestly significant
difference test for factors showing significant main effects, with significance thresholds set atp<0.05, 0.01,
and 0.001.
Quantitative DTI Measures
For each voxel, the diffusion tensor was estimated from the preprocessed DWI using a trilinear interpolation
approach that models the diffusion-weighted signal. Voxel-wise maps of FA, MD, AD, and RD were subse-
quently derived from the fitted tensor, providing quantitative indices of tissue microstructural organization.
Alterations in these diffusion metrics are sensitive to changes in white matter integrity, including disruptions
to axonal structure and myelination, and may reflect compromised axonal integrity or delayed or incomplete
myelin development [46,47].
At each voxel, the diffusion tensor is represented as a symmetric3 × 3 matrix, which can be diagonalized to
yield three eigenvalues:λ1, λ2, and λ3. Here, λ1 denotes the principal eigenvalue, whileλ2 and λ3 correspond
to the minor eigenvalues.
FA measures the degree of diffusion anisotropy and is calculated as:
FA=
s
(λ1 −λ 2)2 + (λ2 −λ 3)2 + (λ3 −λ 1)2
2(λ2
1 +λ 2
2 +λ 2
3) (1)
MD is defined as the average of the eigenvalues:
MD= λ1 +λ 2 +λ 3
3 (2)
AD corresponds to the principal eigenvalue:
AD=λ 1 (3)
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RD is defined as the mean of the two minor eigenvalues:
RD= λ2 +λ 3
2 (4)
FA ranges from 0, representing completely isotropic diffusion, to 1, representing highly anisotropic diffusion.
AD reflects diffusion along the main fiber direction, whereas RD reflects diffusion perpendicular to it.
Taken together, these metrics offer complementary and biologically informative measures of white matter
microstructural organization.
After diffusion metric maps were generated, the b0 images for each subject were averaged and registered
to the P56 Allen Brain Atlas [19] using the same registration procedure described above. The resulting
transformation matrices were then applied to each subject’s diffusion metric maps, including FA, MD, AD,
and RD, to bring all maps into a common atlas space for downstream analyses.
Brain-Behavior Correlation Analysis
Associations between brain volume and RRB were examined using nonparametric correlation analyses. For
each experimental group, Spearman’s rank correlation coefficients [48] were calculated between regional brain
volumes and log-transformed behavioral measures (log10[RRB]) to account for non-normality. Correlations
were computed within groups to preserve strain, housing, and sex specificity, with a minimum sample size of
three animals per group required for inclusion.
To further investigate the relationship between microstructural brain alterations and behavior, similar
correlation analyses were performed on diffusion-derived metrics, including FA, MD, AD, and RD. For each
experimental group, Spearman’s rank correlations were computed between voxel-averaged diffusion metrics
and RRB measures.
For both volumetric and diffusion-derived metrics, confidence intervals for correlation coefficients were
estimated using bootstrap resampling (5,000 iterations), and false discovery rate (FDR) correction was applied
to control for multiple comparisons across groups.
Fiber Tractography Analysis
Fiber tractography was performed to reconstruct and visualize white matter pathways from preprocessed
diffusion tensor imaging data. Whole-brain fiber tracking was initiated from a grid of seed points defined
within user-specified ranges along the X, Y, and Z axes. Tracking was guided by the principal eigenvectors
of the diffusion tensor, with step sizes of 0.05 mm scaled relative to voxel dimensions to ensure accurate
trajectory propagation. Fibers were terminated when FA fell below 0.01, the curvature exceeded 60°, or the
fiber length exceeded predefined minimum (1 mm) and maximum (12 mm) thresholds, thereby balancing
sensitivity to genuine fiber tracts while limiting spurious paths. Both unidirectional and bidirectional tracking
were performed to fully reconstruct fiber trajectories from each seed point.
For each fiber tract, voxel-wise attributes including FA, deviation angles, and the projected force-encoded
vector (FEFA) were recorded, and 3D position data were stored in a format compatible with subsequent
analyses. Fiber tract density maps and index maps were generated to quantify voxel-wise tract involvement
and tract counts. Fiber visualization was performed using anatomical and RGB-encoded 3D renderings,
enabling inspection from sagittal, coronal, and axial perspectives. All tractography results, including tract
19
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geometry, angular deviations, and tract counts, were saved for downstream analyses, providing comprehensive
information for the investigation of white matter microstructure and connectivity.
Data A vailability
The MRI data used to generate all main and supplementary figures are available for download from OpenNeuro
at https://openneuro.org/datasets/ds005236 [40]. All source data are provided with this paper.
Code A vailability
The code used to preprocess the data and generate all manuscript figures is available on GitHub athttps:
//github.com/qianglisinoeusa/mouseC58RRB. The following software and toolboxes were used in the
analysis: MATLAB (R2020a), PCNN3D, Vistasoft, NIfTI, SPM8, FSL, and ANTs.
Acknowledgments
This work was supported by the National Science Foundation (NSF) grant 2112455, and the National
Institutes of Health (NIH) grants R01MH123610 and R01MH119251.
We also acknowledge the MRI data acquisition supported by NIH grant S10RR025671 for MRI/S instru-
mentation, and by the Advanced Magnetic Resonance Imaging and Spectroscopy (AMRIS) Facility at the
McKnight Brain Institute, National High Magnetic Field Laboratory, which is supported by the National
Science Foundation Cooperative Agreement DMR-1644779 and the State of Florida.
Contributions
Q. Li., VD. Calhoun.: Conceptualization, Investigation, Software, Writing - Review & editing. AL. Farmer.:
Behavior and MRI data acquisition. Q. Li., AL. Farmer., GD. Pearlson., VD. Calhoun.: Writing - Review &
editing. VD. Calhoun.: Funding Acquisition.
Competing Interests
The authors declare no conflict of interest.
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24
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Supplementary Information
Environmental Enrichment Remodels Brain Structural and Behavioral Plasticity in
Restricted and Repetitive C58 Mouse Models
Qiang Li, Anna L. F armer, Godfrey D. Pearlson, and Vince D. Calhoun
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Figure S1: Hierarchical organization of mouse brain regions (P56 Allen Brain Atlas). Related to
Figure 1.
26
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Figure S2: Volumes of mouse brain regions (regions 1–100) for each group, reported as mean± standard deviation. Related to Figure 1.
27
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Figure S3: Volumes of mouse brain regions (regions 101–200) for each group, reported as mean± standard deviation. Related to Figure 1.
28
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Figure S4: Volumes of mouse brain regions (regions 201–300) for each group, reported as mean± standard deviation. Related to Figure 1.
29
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Figure S5: Volumes of mouse brain regions (regions 301–350) for each group, reported as mean± standard deviation. Related to Figure 1.
30
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Figure S6: Volumes of the hippocampal formation and striatum and their correlations with behavior.
Correlation and p-values are reported for each group. Related to Figure 2.
31
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Figure S7: Volumes of the thalamus and hypothalamus and their correlations with behavior.
Correlation and p-values are reported for each group. Related to Figure 2.
32
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Figure S8: Statistical comparison of diffusion metrics (AD, MD, and RD) between C57 and C58
mouse strains. Related to Figure 4.
33
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Figure S9: Sparse fiber tractography of C57 and C58 mice (female and male) under standard housing
(SH) and environmental enrichment (EE) conditions. The arrows highlight the main differences.
Related to Figure 5 and Figure 6.
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