RetiGene, a comprehensive gene atlas for inherited retinal diseases (IRDs)

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Summary Inherited retinal diseases (IRDs) are rare disorders, typically presenting as Mendelian traits, that result in stationary or progressive visual impairment. They are characterized by extensive genetic heterogeneity, possibly the highest among all human genetic diseases, as well as diverse inheritance patterns. Despite advances in gene discovery, limited understanding of gene function and challenges in accurately interpreting variants continue to hinder both molecular diagnosis and genetic research in IRDs. One key problem is the absence of a comprehensive and widely accepted catalogue of disease genes, which would ensure consistent genetic testing and reliable molecular diagnoses. With the rapid pace of IRD gene discovery, gene catalogues require frequent validation and updates to remain clinically and scientifically useful. To address these gaps, we developed RetiGene, an expert-curated gene atlas that integrates variant data, bulk and single-cell RNA sequencing, and functional annotations. Through the integration of diverse data sources, RetiGene supports candidate gene prioritization, functional studies, and therapeutic development in IRDs. The authors have declared no competing interest. Funder Information Declared Ghent University Special Research Fund, BOF22/DOC/229 Research Foundation - Flanders, https://ror.org/03qtxy027, 1SD8924N, 11PS324N, G0ACQ24N Centro de Investigación Biomédica en Red (CIBER) Instituto de Salud Carlos III, https://ror.org/00ca2c886, CP22/00028, PI22/01371, PI22/00321, PI22/00213, AC21_2/00022, FORT23/00021 HORIZON programme, HORIZON-HLTH-2023-TOOL-05-04, BETTER, PI22/01371 Foundation Fighting Blindness Project Program Award, PPA-0622-0841-UCL Centro de Investigación Biomédica en Red Enfermedades Raras, 06/07/0036 IIS-FJD BioBank, PT13/0010/0012 Organización Nacional de Ciegos Españoles, https://ror.org/058cmwb06 European Regional Development Fund University Chair UAM-IIS-FJD of Genomic Medicine Fondazione Telethon, PE00000006, CUP H93C22000660006-MNESYS Foundation Fighting Blindness USA, BR-GE-0120-0775-LUMC RP Fighting Blindness and Fight for Sight UK, RP Genome Project GR586 The Montreal Children's Hospital Foundation The Vision Sciences Research Network The National Institutes of Health, R01 EY030499-01, Dr. Lentz, UG1EY033286, UG1EY033293, UG1EY033286, UG1EY033292 The Canadian Institutes for Health Research Fighting Blindness Canada Fonds de Recherche du Québec - Santé the Generalitat Valenciana, CIPROM/2023/26 Swiss National Science Foundation, 204285

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License: CC-BY-4.0