Methods
Participants
Data from the Generation Scotland Scottish Family Health Study (GS:SFHS) and the
subsequent Stratifying Resilience and Depression Longitudinally (STRADL) study was used
in this study. The GS:SFHS dataset of around 24,000 community-based participants (aged
over 18) contains detailed socio-demographic and clinical data collected at study entry
between 2006-2011[78]. A subset of the GS:SFHS participants took part in the subsequent
STRADL study 3-11 years later[36,64]. Participants were invited to complete various face-
to-face assessments, sample collection and brain magnetic resonance imaging (MRI)
scanning either at Aberdeen or Dundee Universities.
Public and patient involvement
The Chronic Pain Advisory Group (CPAG), comprising individuals with lived experience of
chronic pain and ACEs, contributed to the development and refinement of the research
questions. Members of the CPAG were involved throughout the research process as part of
the Consortium Against Pain inEquality (CAPE), which prioritises inclusive and
participatory research practices.
Questionnaire data and clinical interviews
All participants were assessed for a lifetime history of MDD. Repeating the GS:SFHS
baseline assessment of depression in the STRADL study, a research version of the Structured
Clinical Interview for DSM-IV disorders (SCID)
[22] was used to assess symptoms of mood
disorder (including MDD and episodes of mania and hypomania) according to the Diagnostic
and Statistical Manual of Mental Disorders (DSM-IV-TR) criteria. For the assessment of the
severity of depressive symptoms, the Quick Inventory of Depressive Symptomatology
(QIDS)[43] was administered, a 16-item mood questionnaire. Adverse childhood experiences
(childhood or adolescent abuse or neglect) were assessed using the Childhood Trauma
Questionnaire short form (CTQ-SF) [8] . This is a 28-item quantitative and retrospective
inventory that assesses histories of abuse and neglect; the subscale of the questionnaire
includes emotional, physical, and sexual abuse and emotional and physical neglect
Chronic pain was assessed through a pre-clinic questionnaire in the GS:SFHS study, which
occurred about a decade earlier than the STRADL study. Participants were asked if they
experienced continuous or intermittent pain, and if yes, whether this pain had lasted for at
least 3 months or more. Those answering yes to both questions, the Chronic Pain Definition
(CPD) questionnaire
[70] , were classified as having chronic pain and were asked to complete
additional questions to assess chronic pain severity using the CPG questionnaire [79,87] . This
seven-item questionnaire classifies respondents into four grades of severity: CPG 1 (low
disability, low intensity), CPG 2 (low disability, high intensity), CPG 3 (high disability,
moderately limiting) and CPG 4 (high disability, severely limiting). Odds ratios for
associations with socio-demographic variables were calculated.
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5
fMRI data acquisition
T1-weighted images and functional MRI data were acquired at Dundee and Aberdeen
Universities. In Aberdeen, participants were imaged on a 3T Philips Achieva TX-series MRI
system (Philips Page 10 of 31 Healthcare, Best, Netherlands) with a 32-channel phased-array
head coil and a back facing mirror (software version 5.1.7; gradients with maximum
amplitude 80 mT/m and maxi-mum slew rate 100 T/m/s). For the functional MRI acquisition
in Aberdeen, a projector and “Presentation” (Neurobehavioural Systems Inc, Berkeley, CA,
USA) version 18.1 were used with a repetition time of 1.56 s, echo time of 26 ms, flip angle
of 70
◦ , field of view 217 mm, matrix 64x64, 32 axial slices were used. In Dundee,
participants were scanned using a Siemens 3T Prisma-FIT (Siemens, Erlangen, Germany)
with 20 20-channel head and neck phased array coil and a back-facing mirror (Syngo E11,
gradient with max amplitude 80 mT/m and maximum slew rate 200 T/m/s). A magnetic
resonance compatible LCD screen was used to display fMRI (NordicNeuroLab, Bergen,
Norway) task stimuli using “Presentation” version 20.0 using repetition time 1.56 s, echo
time 22 ms, flip angle 70◦ , field of view 217 mm, matrix 64x64 and 32 axial slices.
A blocked fMRI design was used to analyse the implicit emotional processing task with 6
blocks. A particular focus was to assess emotional-limbic circuitry and the neural responses
to viewing fearful faces. The participants observed a block of 6 faces (neutral or fearful); see
Figure 1 . To avoid a gender bias with the images, two versions of the tasks were used,
counterbalanced across participants. The NimStim facial expression set was used to display
neutral and fearful faces
[83] .
Image Pre-processing and First-level Analysis
The functional MRI images were analysed using Statistical Parametric Mapping 12 (SPM12),
and a manual check for artefacts was conducted prior to the pre-processing analysis, and the
first eight blood oxygen level-dependent volumes were discarded as standard because of
transient effects. Functional images were realigned to match the first image by applying a
six-parameter rigid body transformation; then the T1-weighted structural image was co-
registered to the realigned functional images. The T1-weighted structural image was then
segmented into different tissue types using the SPM12 tissue probability maps, and the
resulting deformation field was used to normalise the images. The final step of the pre-
processing analysis involved using an 8 mm full width at half maximum Gaussian kernel to
smooth the functional images.
An event-related design was used for the first-level analysis. A first-level general linear
model (GLM) design matrix included two columns of possible outcomes: fearful and neutral
faces. The six rigid body motion realignment parameters estimates obtained during pre-
processing were included as covariates of no interest. Events were modelled as truncated
delta functions, which were then convolved with the SPM12 canonical haemodynamic
response function without time or dispersion derivatives.
Random effects, event-related fMRI analyses were done using data from 579 participants,
which included 238 subjects with chronic pain, 60 subjects with emotional neglect and 79
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6
subjects with emotional abuse. As recommendations for DCM [26,91,92] , data from 371
subjects who had sufficiently strong functional MRI signals in the regions of interest for
analyses were selected.
Dynamic Causal Modelling (DCM) Analysis
The DCM, as implemented in SPM12, was used to analyse the effect of the emotional
processing task on effective connectivity within brain regions, exploring whether the
effective connectivity strengths were related to reported chronic pain and ACEs. DCM allows
the investigation of the relationships between inputs, internal states, and outputs across a
network of brain regions
[25] . The inputs are external stimulus functions (task variables),
internal states correspond to neuronal and neurophysiological variables necessary to produce
outputs, and the outputs are the hemodynamic responses measured by fMRI. Inputs can elicit
responses in two ways. One way is by directly activating specific brain regions, for example,
a visual stimulus may directly activate the visual cortices. The second is by indirectly
influencing the connections among brain regions by modulating the coupling among nodes.
In the DCM method, the interactions between brain regions when no specific task is being
performed are referred to as intrinsic connections, and coupling between nodes caused by
experimental conditions is referred to as modulation.
The driving input is typically represented as the immediate impact of experimental stimulus
information on specific brain regions. In the emotional processing task, fearful and neutral
faces were used, so the visual stimuli directly activated occipital regions, subsequently
driving inputs to the rest of the brain network examined in this study.
Time series extraction
Brain volumes of interest (VOI) were selected to test the hypotheses of chronic pain and
ACEs changes in effective connectivity between regions which are part of the salience and
pain processing networks. The current study identified the coordinates of the left ACC,
insula, and thalamus by using regions of the brain that showed significant activity when
participants viewed fearful faces compared to neutral ones. The time series of VOIs were
extracted from second-level peak coordinates by creating masks using WFUPickAtlas for the
ACC, insula and thalamus, allowing SPM to find peak coordinates within the masks for each
individual. The MNI coordinates of the VOIs were surrounded with 8mm spheres, and the
first principal component of the time series was extracted for each participant.
The selection of the left ACC, Insula, and Thalamus was based on their established role in
emotional regulation and stress response mechanisms
[30,32,69,76,81,88] , particularly in
relation to the dysfunction and structural changes that appear in individuals with
ACEs[5,38,49,82,90] and chronic pain [4,10,27,33,40,93] . The Thalamus, in addition to its
role in processing sensory information such as pain [35,40] has extensive connections to
various other brain regions, much like the ACC and Insula [2,14,23,31,65,76] . The anterior
insula and anterior cingulate are linked to the experience of pain but are also activated by
other aversive experiences, including negative affect and anxiety
[66,76] and the insula and
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7
ACC have reciprocal projections [14,23,31] . The spinothalamic tract transmits information
about pain to the posterior thalamus, with its main cortical projections being the posterior
insula, parietal operculum, and mid-cingulate cortex[29] .
Bayesian model selection and averaging
A DCM model with bi-linear dynamics and a single state per region was assumed with no
stochastic effect and mean-centred. A fully connected model with nine connections,
including self-inhibitory connections, was fitted in the first-level analysis, and the percentage
of the variance that was explained was calculated. The PEB (Parametric Empirical Bayes)
framework
[26,91,92] was employed to model similarities and variations among participants.
At the second level, individual DCMs underwent Bayesian Model Reduction (BMR) to
eliminate connections by estimating different reduced PEB models within which certain
parameters were ‘switched off’ [92] . A “greedy” automated search procedure was employed
to iteratively eliminate parameters that had no impact on the free energy [92] . For statistical
comparison of the model parameters, Bayesian model averaging (BMA) was performed to
compute the average of DCM parameter estimates across the entire model space, with
weights based on the posterior probabilities of each model[67,91,92] . The PEB design matrix
at the group level for between-subject comparison included a column of ones representing the
average connectivity across participants and a zero-mean centred column of the covariates of
interest, such as reported chronic pain, emotional abuse, and emotional neglect scores. The
within-subject design matrix at the group level was specified as the identity matrix, implying
that the covariates could potentially affect each within-subject DCM parameter. The
complete PEB model was inverted to calculate parameter estimates and the “free energy” of
the model.
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8
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Tables
Subgroup category
Proportion of
participants
with CP
mean se median min max
Age
- - 58.70 0.43 61 26 82 25-34 11/21 - - - - - 35-44 12/40 - - - - - 45-54 28/88 - - - - - 55-64 127/292 - - - - - 65-74 53/121 - - - - - >75 7/17 - - - - -
Sex* F 159/349 58.30 0.56 61 26 82 M 79/230 59.39 0.68 61 26 81
Chronic
Pain CPG
- 238/579 - 0.06 1 0 4 I (low-disability-low
intensity) 130/238 - - - - -
II(low-disability-high
intensity) 64/238 - - - - -
III (high disability-
moderately limiting) 18/238 - - - - -
IV (high disability-
severely limiting) 18/238 - - - - -
Depression
Severity
Depression
- 85/156 - 0.03 0 0 4 0 153/423 - - - - - 1 53/115 - - - - - 2 13/21 - - - - - 3 16/17 - - - - - 4 3/3 - - - - -
QIDS - - - 0.25 3 0 22
Adverse
Childhood
Experiences
Sub-Scores
Physical Abuse - 38/70 6.00 0.09 5 5 24
Sexual Abuse - 31/54 6.15 0.16 5 5 25
Emotional Abuse - 45/79 6.88 0.14 5 5 25
Physical Neglect - 64/126 6.26 0.09 5 4 21
Emotional Neglect - 39/60 8.43 0.17 7 4 25
Table 1: Clinical and demographic characteristics of the population. Includes associations of age, sex,
depression, and adverse childhood experiences with ‘chronic pain’. Age was assessed during face-to-face entry
of the STRADL study. Quick Inventory of Depressive Symptomatology; QIDS, chronic pain grade; CPG,
adverse childhood experiences; ACEs.
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Figures
Figure 1: Implicit emotional processing task (fearful versus neutral faces): block fMRI design, 6
blocks of neutral and fearful faces from NimStim set of facial expressions set. Two versions of the ta sk
were used in and counterbalance across participants, to avoid a gender bias of the images.
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(a) DCM analysis pipeline
(b) DCM results
Figure 2: (a) DCMs were brought to the second stage, where the Bayesian Model Reduction (BMR) technique was
applied to remove any unnecessary connections. Then, the Bayesian Model Averaging (BMA) method was utilized
to combine the DCMs into a single model, taking i nto account the probabilities of each individual DCM. The fin al