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Acknowledgments
We thank Dr. Martina Ralle (OHSU) for metal analysis, Dr. Betty Eipper for providing high -quality
antibody, Mr. Benjamin Devenney for assistance with the initial animal work, and Dr. Dwight
Bergles for helpful advice. CLAMS studies were made possible by t he Johns Hopkins IBBS Core
Coins award to SL.
Funding:
This work was supported by the National Institute of Health grant R01NS134958 to SL.
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
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Author contributions:
Conceptualization: SR and SL
Methodology: KM, AW, AC, AT, MP, CT, KG
Investigation: SR, YW, NS, KK, AM, SA, LTH
Visualization: SR, YW, NS, AC, SA, KK
Supervision: SL, CHN, AK, TO’H
Writing—original draft: SR, YW, NS, KM, SL
Writing—review & editing: SR, SA, AK, MP, TO’H, KG, SL
Competing interests:
None
Data and materials availability:
The mass spectrometry proteomics data have been deposited to the ProteomeXchange
Consortium via the PRIDE partner repository with the dataset identifier PXD069564 and
10.6019/PXD069564
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Figure 1. Targeted inactivation of Atp7a and Atp7b in noradrenergic neurons
(a)The schematic of predicted functions of the ATP -driven Cu transporters in noradrenergic neurons.
ATP7A is located in the trans -Golgi network and delivers Cu cofactor to DBH; ATP7B is in cytoplasmic
vesicles, where it sequesters Cu from the cytosol. Cu -bound DBH is located in secretory granules where it
converts dopamine (DA) to norepinephrine (NE), which is then released upon neuronal activation. ( b)
Strategy for generating Atp7aΔDbh and Atp7bΔDbh mice: Atp7aLoxP/LoxP or Atp7bLoxP/LoxP female mice were
crossed with male mice expressing Cre -recombinase under the DBH promoter ( DBH-Cre mice) for
targeted deletion in noradrenergic neurons. ( c,d) Coronal brain sections from wild -type control and
Atp7aΔDbh (c) or Atp7bΔDbh mice (d) were co-immunostained for tyrosine hydroxylase (Th) (Red), a
marker of noradrenergic neurons, and either Atp7a (Green) or Atp7b (Green). In Atp7aΔDbh and Atp7bΔDbh
mice, the respective transporter signal was undetectable in Th -positive neurons (outlined by dotted line),
indicating successful deletion within the noradrenergic cell population. 3 coronal brain sections for n=3;
animals were analyzed per genotype.
b
d
a
c
Atp7a Dbh
Atp7b Dbh
Atp7b Dbh Atp7a Dbh
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Figure 2: The effects of Atp7a and Atp7b deletion on Cu levels in locus coeruleus
(a) Analysis of Cu content in whole brain homogenates by atomic absorption spectroscopy found no
difference for the age -matched 20 -week-old wild-type, Atp7aΔDbh, and Atp7bΔDbh mice
(b) Cu levels in peripheral tissues (liver, adipose) are unchanged across the genotypes. ( c) Representative
coronal brain sections analyzed by laser ablation inductively coupled plasma mass spectrometry (LA -ICP-
MS) are shown, with metal distribution maps overlaid on tyrosine hydroxylase immunofluorescence
confocal images (TH is gree n, nuclei are blue). Less intense Cu signal is apparent in the Th -positive
region. (d) Quantitation of LA -ICP-MS signals in coronal brain sections reveals reduced Cu, Fe, and Zn
levels in the locus coeruleus of Atp7a ΔDbh mice compared to wild -type controls. ( e) Metal levels in the
medulla oblongata (ROI) (indicated by white dotted lines) are compared across wild -type, Atp7aΔDbh, and
Atp7bΔDbh mice. (f) Immunostaining for Atp7b (red) in noradrenergic LC neurons (TH, green; LC outlined
by the white dotted line) shows reduced Atp7b signal in Atp7aΔDbh mice compared to wild type
(Supplementary figure S2) ( g) Immunostaining for Atp7a (red) in noradrenergic LC neurons (TH, green;
LC outlined by white dotted line) shows no change in Atp7bΔDbh mice compared to wild type. In all
experiments, 3 -4 mice were used for each genotype, ns = not significant; *p < 0.05; **p < 0.01;
***p < 0.001; ****p < 0.0001.
a b
d
c
e
f g
Wild type
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Figure 3. Inactivation of Atp7a or Atp7b in NE neurons reduces Dbh expression and alters
catecholamine metabolism
(a) Representative immunoblots of the whole -brain homogenates show markedly reduced Dbh expression
in 20-week-old Atp7aΔDbh compared to Atp7aLoxP/LoxP (Atp7aFlox) and wild-type controls. Additional
replicates are shown in the supplementary figure S11. ( b) Densitometry of DBH signal normalized to
Na+/K+ ATPase confirms significantly reduced Dbh in 20-week-old Atp7aΔDbh brains. (c) Representative
coronal brain sections (10 μm) from 20-week-old mice immunostained for Dbh (green) and tyrosine
hydroxylase (Th, red) highlight noradrenergic neurons in the locus coeruleus (LC); Atp7aΔDbh brains
display marked loss of Dbh signal compared to controls. ( d) Dbh-positive neurons were normalized to the
total number of TH -stained neurons in the LC. Three coronal brain sections from n=3 animals per
genotype were analyzed. ( e) Immunoblots at 4 weeks similarly show reduced Dbh expression in both
Atp7aΔDbh and Atp7bΔDbh. (f) Densitometry of the Dbh signal normalized to Na +/K+ ATPase confirms
significantly reduced Dbh in 4-week-old Atp7aΔDbh and Atp7bΔDbh brains. LC-MS metabolite analysis of
whole-brain homogenates reveals a ( g) decreased norepinephrine (NE) and ( h) increased dopamine
(DA)/NE ratio in Atp7aΔDbh mice relative to Atp7aFlox controls (20 weeks, n=5). ( i) increased DA/NE
ratio in Atp7bΔDbh brain homogenates relative to Atp7bFlox controls (20 weeks, n = 3). Data are mean ±
SEM. Statistical analysis: unpaired two -tailed Student’s t -test with Welch’s correction; *p < 0.05, **p <
0.01. Data points for Atp7aFlox, Atp7bFlox, Atp7aΔDbh, and Atp7bΔDbh are shown in black, blue, orange,
and green, respectively.
20 weeksa
b
Atp7a DbhAtp7b Dbh Wild type
c
d
e f g
h i
4 week
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Figure 4. Loss of Atp7a but not Atp7b induces autophagic and neuroinflammatory responses in
locus coeruleus.
(a, b) Volcano plots showing differentially expressed proteins in Atp7aΔDbh (a) and Atp7bΔDbh (b) laser-
dissected locus coeruleus compared to the respective LoxP/LoxP controls. (c, d) Principal component
analysis of proteomic datasets demonstrates clear segregation between mutant and control samples for
Atp7aΔDbh (c) and Atp7bΔDbh (d). (e) Immunofluorescence staining of coronal brain sections demonstrates
accumulation of the autophagy adaptor p62 (red) in Atp7aΔDbh neurons, colocalizing with tyrosine
hydroxylase (TH, green). (f) Enhanced microglial activation in Atp7aΔDbh LC, indicated by increased Iba1
immunoreactivity (red). ( g) Iba1 staining in Atp7bΔDbh LC is similar to controls. ( h) Quantification of
Iba1+ cells in the LC (n = 3 mice per genotype). Data are mean ± SEM. Statistical analysis: unpaired two -
tailed Student’s t -test with Wel ch’s correction; *p < 0.05, **p < 0.01. Data points for Atp7aFlox,
Atp7bFlox, Atp7aΔDbh, and Atp7bΔDbh are shown in black, blue, orange, and green, respectively.
Wild typeDbh Atp7a
a b
e
f
g
h
c d
Atp7bFlox
Atp7a Dbh
Atp7a Flox
Atp7b Dbh
Atp7a Dbh
Atp7a Dbh
Atp7b Dbh
(Atp7a Dbh/Atp7aflox) (Atp7b Dbh/Atp7bflox)
Atp7b DbhAtp7a Dbh
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Figure 5: Altered glucose metabolism, enhanced energy expenditure, and food intake in Atp7aΔDbh
mice.
(a) Glucose tolerance test (GTT) shows reduced blood glucose levels in Atp7aΔDbh mice compared to the
wild-type controls. ( b) Insulin tolerance test (ITT) shows that Atp7aΔDbh mice respond to insulin and
remain hypoglycemic. ( c) The pyruvate tolerance test (PTT) demonstrates impaired gluconeogenesis in
Atp7aΔDbh mice. (d) Body weight and composition (including fat and lean mass percentages) showed no
significant differences between genotypes. (e) Daily food intake increased in Atp7aΔDbh mice. (f) Indirect
calorimetric analysis reveals that energy expenditure (normalized to lean mass or body weight) increases
in Atp7aΔDbh mice during light, dark, and whole -day (total) periods. ( g) Respiratory exchange ratio (RER)
shows no significant difference between the genotypes. ( h) Ambulatory and total activity counts over
light, dark, and whole -day periods show no significant differences between groups. Data are presented as
mean ± SEM; p < 0.05; p < 0.01; p < 0.001; p < 0.0001; ns, not significant (n=5 -12 mice per genotype)
a b
c d
e f
hg
GTT ITT
PTT
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Figure 6: Altered non-shivering thermogenesis and adipose tissue morphology and thermogenic
gene expression in Atp7aΔDbh and Atp7bΔDbh
(a) Images illustrating the warmth -seeking behaviour of Atp7aΔDbh and Atp7bΔDbh mice compared to
the Atp7aFlox and Atp7bFlox animals. (b) Hematoxylin and eosin (H&E) -stained sections of brown
adipose tissue (BAT) show enlarged adipocytes in Atp7aΔDbh and Atp7bΔDbh mice relative to the wild type.
(c) Quantification of BAT adipocyte size confirms a significant increase in adipocyte size in both
mutants. (d –e) Relative mRNA expression of thermogenesis -related genes in BAT: ( d) PGC1α and (e)
UCP1 are reduced in Atp7aΔDbh compared to wild type. ( f) H&E-stained sections of inguinal white
adipose tissue (iWAT) reveal enlarged adipocytes in Atp7aΔDbh. (g) Quantification of iWAT adipocyte
size demonstrates significantly increased adipocyte size in Atp7aΔDbh mice compared to wild type. (h)
H&E-stained sections of gonadal white adipose tissue (gWAT). ( i) Quantification of gWAT adipocyte
size shows significantly increased adipocyte size in Atp7aΔDbh mice compared to wild type. Data represent
mean ± SEM. Statistical analysis: unpaired Student’s t -test; ns = not significant; *p < 0.05, **p < 0.01,
****p < 0.0001.
PGC1 , BAT UCP1, BAT
a
c d e
g
h
i
*
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Figure 7: Atp7aΔDbh animals exhibit severe hypothermia under acute cold stress
(a) Twelve-week-old Atp7aΔDbh male mice and Atp7aFlox controls (n = 5 -6) were exposed to acute
cold stress (6°C) after prolonged thermoneutral housing (30°C for 10 days). Unlike the age -matched
Atp7aFlox, Atp7aΔDbh mice were unable to maintain core body temperature (>30°C). ( b) The body weight
of Atp7aΔDbh and Atp7aFlox controls showed no significant difference before and after cold exposure. ( c)
The weight of brown adipose tissue (BAT) in Atp7aΔDbh animals is significantly higher compared to
controls. ( d, e) Gonadal white adipose tissue (gWAT) weight did not differ significantly between
Atp7aΔDbh and Atp7aFlox controls. ( f) Representative hematoxylin and eosin (H&E) - stained sections of
BAT from Atp7aFlox and Atp7aΔDbh mice, maintained in thermoneutrality (30 °C for 10 days), reveal
enlarged adipocytes indicative of defective lipolysis in mutant animals. (g) Quantification confirms
significant increases in adipocyte size in BAT. ( h) H&E-stained sections of BAT isolated from Atp7aΔDbh
and Atp7aFlox controls following acute cold stress at 6 °C for 5 hours show enlarged lipid droplets in
BAT compared to the Atp7bFlox controls. ( i) Quantification supports these observations. Data are
presented as mean ± SEM. Statistical significance was determined by unpaired Student’s t -test: p < 0.05,
p < 0.01, p < 0.0001; ns = not significant.
a b
c d e
g
h i
Thermoneutrality
Cold exposure
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Figure 8. Impaired lipolysis in adipose tissues of Atp7bΔDbh mice following acute cold stress.
(a) Twelve-week-old male Atp7bΔDbh and Atp7bFlox animals (n = 4 per genotype) were exposed to cold
exposure (6°C) for 6 hours and showed a mild thermoregulatory defect. Although partial recovery was
observed at 6 hours in both groups, Atp7bΔDbh mice continued to trend toward hypothermia compared to
Atp7bFlox controls. (b) The body weight of Atp7bΔDbh and Atp7bFlox controls remained unchanged
before and after cold exposure. ( c) Atp7bΔDbh animals displayed significantly increased BAT weight
relative to controls. ( d, e) gWAT and iWAT weights showed no significant difference between Atp7bΔDbh
and Atp7bFlox controls. (f) Representative H&E -stained BAT sections from Atp7aFlox and Atp7aΔDbh
mice following cold stress at 6°C for 6 hours revealed enlarged adipocytes in Atp7aΔDbh animals,
consistent with impaired lipolysis. ( g) Quantification confirms significant increases in adipocyte size in
BAT in Atp7aΔDbh animals compared to the Atp7bFlox controls. Data are shown as mean ± SEM ( n = 4
mice per group). Statistical significance was determined using Graphpad Prism Version 10, using an
unpaired two-tailed Student’s t-test with Welch’s correction. *p < 0.05, **p < 0.01, ****p < 0.0001; ns =
not significant.
Cold exposurea b
c d e
gCold exposure
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Table 1. The most significantly changed proteins (fold change >1.5, p-value<0.05) in
Atp7aΔDBH locus coeruleus (proteins directly involved in NE metabolism are in blue)
Symbol Protein name Fold
Change
Function
Upregulated in Atp7aDBH
VAC14
VAC14 component of PIKFYVE
complex 2.49
synthesis and turnover of PI(3,5)P2,
endosomal trafficking
TSNAXIP1
translin associated factor X
interacting protein 1 2.47 sperm motility and cilia function
NDEL1
nudE neurodevelopment protein 1
like 1 1.76
neuronal migration, mitosis, and the
maintenance of cell structures
FRMD4A FERM domain containing 4A 1.74 scaffolding, cell polarity
MEMO1 mediator of cell motility 1 1.66 cell migration
SCYL1 SCY1 like pseudokinase 1 1.54
regulating Golgi morphology and
COPI trafficking
SCN2B
sodium voltage-gated channel beta
subunit 2
1.5
ion transport
Downregulated in Atp7aDBH
CLSTN3 calsyntenin 3 0.63 postsynaptic adhesion molecule
ICA1 islet cell autoantigen 1 0.63 role in neurotransmitter secretion
POLR2M RNA polymerase II subunit M 0.62 translation
C12orf43
chromosome 12 open reading frame
43
0.62
regulation of Wnt signaling
pathway
CKAP4 cytoskeleton associated protein 4 0.61 cell adhesion and migration
DBH dopamine beta-hydroxylase 0.61 NE synthesis
CARMIL1
capping protein regulator and
myosin 1 linker 1 0.6 role in cells protrusions
AASDHPPT
aminoadipate -semialdehyde
dehydrogenase-phosphopantetheinyl
transferase
0.58
biosynthesis of lysine and fatty
acids.
TMEM192 transmembrane protein 192 0.56 lysophagy
SLC25A31 solute carrier family 25 member 31 0.56 mitochondria function, energetics
ARFIP1 ARF interacting protein 1 0.55
biogenesis of secretory granules at
the trans-Golgi network
TH tyrosine hydroxylase 0.53 DOPA synthesis
SLC18A2 solute carrier family 18 member A2 0.52 monoamine transporter
LACTB lactamase beta 0.37 mitochondria lipid metabolism
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Table 2. The most significantly changed proteins (fold change >1.5, p -value<0.05) in
Atp7bΔDBH locus coeruleus
Symbol Protein name Fold
Change
Function
Upregulated in Atp7bDBH
SNCA synuclein alpha 2.9896985 regulation of synaptic functions
IgHg
Immunoglobulin heavy chain
(gamma polypeptide)
2.91399823
long term immunity
IGKC immunoglobulin kappa constant 2.05765342 antibody stabilization
ALB albumin 1.83400809 inhibition of apoptosis
ERBIN erbb2 interacting protein 1.80875876 cell polarity, apoptosis
SERPIN1A
serine peptidase inhibitor, clade A,
member 1A 1.59107297
protective, anti-inflammatory
tole
MVD
mevalonate diphosphate
decarboxylase 1.5822746
lipid synthesis, synaptic
plasticity
APOA1 apolipoprotein A1 1.54114222 cholesterol transport
MPI mannose phosphate isomerase 1.53900722 glycosylation
Pzp PZP, alpha-2-macroglobulin like 1.53368266
inhibitor of NGF-dependent
neuronal outgrowth
SCYL1 SCY1 like pseudokinase 1 1.50316148
regulating Golgi morphology
and COPI trafficking
Downregulated in Atp7bDBH
TALDO1 transaldolase 1 0.63683874 pentose phosphate pathway
CARMIL1
capping protein regulator and
myosin 1 linker 1
0.6172813
actin polymerization
SQSTM1 sequestosome 1 0.59832448 autophagy receptor
SZRD1 SUZ RNA binding domain 1 0.59295725 nonsense -mediated decay
DENND4B DENN domain containing 4B 0.55980644
Rab10 activator, vesicle
trafficking
TMEM192 transmembrane protein 192 0.37241937 lysophagy
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Supplementary Materials for
NON-REDUNDANT ROLES OF COPPER TRANSPORTERS ATP7A AND ATP7B IN
NORADRENERGIC SIGNALING
Shubhrajit Roy et al
*Corresponding authors.
Shubhrajit Roy (
[email protected]) and Svetlana Lutsenko (
[email protected])
This PDF file includes: Supplementary Text Materials and Methods: Figs. S1 to S12
Tables S1, S3 and S4
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Supplemental Materials and Methods LA -ICP-TOF-MS:
a) Preparation and quantification of gelatin standards
Matrix-matched LA -ICP-ToF-MS gelatin standards were made by spiking a molten gelatin solution with
multi-elemental stock solutions to convert counts from elements (m/z) from the LA -ICP-TOF-MS into
concentrations (ppm). Briefly, 10% (w/v) porcine gelatin (Bloom 300, Sigma Aldrich, St. Louis, MO,
USA) solution in ultrapure H2O kept above the melting temperature at 55 oC. Following gelatin
dissolution (care was taken to mix thoroughly while introducing few bubbles via sonication), the first set
of gelatin standards was spiked with IV - Stock-74434 (Inorganic Ventures, 1000 μg/mL: As, B, Ca, Cd,
Co, Cr, Cu, Fe, K, Mg, Mn, Mo, Na, Pb, S, Se, V, Zn) at concentrations of 0, 20, 35 and 50 ppm to
calibrate concentrations of 63Cu, 56Fe and 66Zn. The second set of standards was prepared to evalu ate
Na/P at concentrations of 0, 2000, 4000, and 8000 ppm using monosodium phosphate (Reagent Plus
grade, ≥99.0%, Millipore Sigma, St. Louis, MO, USA). Both sets of gelatin standards were maintained at
55 oC before pipetting 250 μl from each gelatin standar d directly on a pre -cooled cryotome chuck ( -20
oC). Gelatin was allowed to freeze completely in the cryostat for at least 5 minutes before sectioning.
Sectioning was accomplished using a Leica CM3050S cryostat (Leica Biosystems, DerPark, IL, USA)
with a chamber temperature of −22 °C and objective temperature of −20 °C. Once solidified, standards
and murine brain tissues were sectioned at 10 μm thickness and adhered to positively charged glass slides
(Superfrost Plus, Thermo Fisher Scientific, Waltham, MA, U SA). The elemental concentrations of the
gelatin standards were confirmed with ICP -QQQ-MS and ICP -OES as previously described (21).
b) Data acquisition and analysis
Tissue samples from 20 -week-old male mice (n=4) and standards mounted on glass slides were ablated
using the ImageBIO 266 laser ablation system (Elemental Scientific Lasers, Bozeman, MT, USA), which
is equipped with a 266 nm laser, an ultra -fast, low-dispersion TwoVol3 ablation chamber, and a dual
concentric injector. The aerosolized sample was transferred to the TOFWERK icpTOF S2 mass
spectrometer (TOFWERK AG, Thune, Switzerland), where the elemental content was analysed in real
time according to mass/char ge (m/z) ratio. Daily tuning was performed using the NIST SRM612 glass
certified reference material (National Institute for Standards and Technology). High intensities for 140Ce
and 55Mn were used to optimize torch alignment, lens voltages, and nebulizer g as flow while maintaining
low oxide formation based on the 232Th16O+/232Th+ ratio (less than 0.5). Laser ablation sampling was
performed at 50% laser power (no dosage) at a repetition rate of 200 Hz using a circular 10 μm spot size.
Helium was used as the carrier gas (chamber and cup helium at 350 ml/min), and laser fluence was 1.80 -
2.26 J/cm2. Ten lines of gelatin standards were ablated using the same parameters but with the raster
spacing set at 30 μm to ensure clean ablation of each raster. Scanning data was recorded using TofPilot
(version 1.3.4.0, TOFWERK AG) and saved in the ope n-source Hierarchical Data Format 5 file format.
Image generation and concentration calibration were conducted using the Iolite software package (version
4.8.6, Elemental Scientific Lasers). Finally, mass -calibrated laser images were overlayed with confoca l
images (using house-built software, unpublished) to locate the LC, where ROIs were made around LC to
quantify 63Cu, 56Fe and 66Zn. 31P was used to normalize each element’s concentration.
CATECHOLAMINE MEASUREMENTS:
a) Sample Preparation for Serum
Serum concentrations of dopamine, norepinephrine, epinephrine, and serotonin were quantified by liquid
chromatography–mass spectrometry (LC –MS) following protein precipitation. Briefly, 50 µL of serum
was combined with 150 µL of methanol, vortexed to ensur e complete protein precipitation, and
centrifuged at 4 °C for 45 min at high speed. LC vials were prepared by spiking 5 µL of 1 µg mL⁻¹
dopamine-d₄ as an internal standard. A 50 µL aliquot of the supernatant was transferred to the spiked
vials, and 10 µL was diluted with 490 µL of methanol. After vortexing, 50 µL of the diluted supernatant
was transferred to a new vial. Additional dilution was performed when necessary to bring serotonin
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concentrations within the calibration range. All samples were dried under vacuum and reconstituted in 50
µL of water prior to analysis.
b) Sample Preparation for Brain Tissue
Brain tissue was homogenized using five 1.4 mm ceramic beads and 1 mL of methanol in a Bead Mill 4
Mini Homogenizer (speed 5, 30 s). Homogenates were centrifuged at 4 °C for 45 min. Supernatants were
processed following the same procedure as serum samples: spiking with 5 µL of 1 µg mL⁻¹ dopamine -d₄,
dilution with methanol, and additional dilution as needed to bring serotonin and dopamine within the
calibration range. Samples were dried under vacuum and reconstituted in 50 µL of water prior to LC –MS
analysis.
c) Calibration Standards
Calibration standards were prepared by serial dilution from 1 mg mL⁻¹ stock solutions of dopamine,
norepinephrine, epinephrine, and serotonin. The calibration range for all analytes was 0.2 –200 ng mL⁻¹.
d) Chromatographic Separation
Liquid chromatography was performed on an Agilent 1290 Infinity II UHPLC system (Agilent
Technologies, Santa Clara, CA, USA) equipped with a Waters Acquity UPLC BEH C18 column (1.7 µm,
2.1 × 100 mm). The mobile phase consisted of water with 0.1% formic aci d (A) and methanol (B). The
gradient program was as follows: 2% B (0 –1.0 min), linear increase to 98% B (1 –4 min), hold at 98% B
(4–6 min), return to 2% B (6 –6.1 min), and re -equilibrate at 2% B (6.1 –10 min). The flow rate was 0.40
mL min⁻¹, the column temperature was maintained at 45 °C, and the injection volume was 10 µL.
LC-MS PROTEOMICS ANALYSIS OF LASER -MICRO-DISSECTED LC
a) Mass Spectrometry Detection
Mass spectrometric analysis was performed using a Sciex 6500+ triple quadrupole mass spectrometer
(Sciex, Framingham, MA, USA) operating in positive electrospray ionization (ESI) mode. Multiple
reaction monitoring (MRM) was used for detection and quantific ation of target compounds (Table 1). The
declustering potential was 60 V, entrance potential 10 V, and collision cell exit potential 8 V. Source
conditions were as follows: curtain gas, 35 psi; ion spray voltage, 5500 eV; source temperature, 500 °C;
ion source gas 1, 65 psi; ion source gas 2, 55 psi. Quantification was performed using Sciex MultiQuant
3.1 software, based on the peak area ratio of the analyte to the internal standard.
b) Data acquisition
Calibration curves were constructed by plotting the peak area ratio of each analyte to the internal standard
against the nominal concentration of calibration standards. Linear regression with 1/x weighting was
applied to all calibration curves. Analyte con centrations in samples were calculated from the
corresponding calibration curve. Method performance was evaluated by assessing linearity (R² ≥ 0.99).
Limits of detection (LOD) and quantification (LOQ) were determined based on a signal -to-noise ratio of
3:1 and 10:1, respectively.
Mass spectrometric data acquisition was performed in data -dependent mode with full scan acquisition
covering a mass-to-charge ratio (m/z) range of 300 –1800 using "Top Speed" mode with a 3 s cycle time.
Precursor ion scans (MS1) were acquired at the resolut ion of 120,000 at m/z 200, while fragment ion
scans (MS2) were obtained using higher -energy collisional dissociation (HCD) at 35% collision energy
and detected at the resolution of 50,000 at m/z 200. Automatic gain control was set to 1 × 10⁶ ions for
MS1 and 5 × 10⁴ ions for MS2, with maximum injection times of 50 ms and 100 ms, respectively.
Precursor isolation was performed using a 1.6 m/z window with 0.4 m/z offset. Dynamic exclusion was
applied for 30 s, and singly charged precursors were excluded. Internal mass calibration was achieved
using the lock mass function (m/z 445.12002) from ambi ent air.
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c) Data Processing
The mass spectrometry data analysis was conducted as described previously with minor modifications.
Protein identification and quantification were performed using Proteome Discoverer software (version
3.2.0.450; Thermo Fisher Scientific). For MS2 preproces sing, the top ten peaks within each 100 Da
window were selected for database searching. Tandem mass spectra were searched against the UniProt
mouse protein database (UP000000589, which included both Swiss -Prot and TrEMBL and was released
in January 2019 wi th 55,435 entries), which contained protein entries with common contaminants (115
entries) using SEQUEST HT search algorithms.
Search parameters included: trypsin digestion with up to two missed cleavages allowed, precursor mass
tolerance of 10 ppm, fragment mass tolerance of 0.02 Da, carbamidomethylation of cysteine (+57.02146
Da) and TMT labeling (+304.20715 Da) on lysine residu es and peptide N -termini as fixed modifications,
and methionine oxidation (+15.99492 Da) as a variable modification. The minimum peptide length was
set to six amino acids, with at least one peptide required per protein identification.
Peptide-spectrum matches (PSMs) and proteins were filtered to achieve a 1% false discovery rate using
Percolator and Protein FDR Validator nodes, respectively. For TMT quantification, reporter ion
integration utilized the most confident centroid method wit h 20 ppm mass tolerance for MS2 -level HCD
fragmentation. Both unique and razor peptides contributed to protein quantification, with a co -isolation
threshold of 50%. Signal -to-noise ratios determined reporter ion abundances, with missing values
replaced by minimum intensity values and an average signal -to-noise threshold of 50. Protein grouping
followed strict parsimony principles, and final protein abundances were calculated by summing all
corresponding PSM reporter ion intensities.
d) Statistical Analysis
Statistical analysis of mass spectrometry data was conducted using Perseus software (version 1.6.0.7).
Data normalization was performed by dividing the reporter ion intensities by the median protein values,
followed by a log2 transformation and median cent ering of the relative abundance values for each sample.
Differential protein expressions between comparison groups were assessed using Student's two -sample t-
test. Proteins exhibiting q -values < 0.05 were designated as significantly differentially express ed. For
volcano plot generation, q -values were determined using Significance Analysis of Microarrays (SAM)
with permutation-based false discovery rate estimation and an S0 parameter of 0.1. Principal Component
Analysis (PCA) analysis was conducted using th e MetaboAnalyst tool. Functional enrichment analysis
was performed using Enrichr to identify significantly enriched biological pathways and Gene Ontology
(GO) terms associated with differentially expressed proteins.
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Fig. S1. PCR validation of mouse genotypes.
(a) Agarose gel electrophoresis (2% agarose in 1× Tris -acetate-EDTA buffer) showing PCR amplification
of the Cre transgene. (b) PCR validation of Atp7aFlox alleles. (c) PCR validation of Atp7bFlox alleles.
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Fig S2: Metal maps for Cu, Zn, Fe and P on coronal brain sections from Wild type, Atp7a ΔDbh
and Atp7bΔDbh using LA-ICPMS
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Fig. S3. (a) Quantification of Atp7b fluorescent intensity in noradrenergic neurons of the Locus Coeruleus
(LC), identified by TH staining, in Atp7aΔDbh and Atp7aFlox coronal brain sections. n=3 animals were
analyzed. Data were analyzed using GraphPad Prism 10 and are presented as mean ± SEM. Statistical
significance was determined using an unpaired two -tailed Student’s t- test: p < 0.05, *p < 0.01, **p <
0.001.
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Fig. S4. Immunoblot showing (a) Dbh from the membrane fraction isolated from whole brain homogenate
from Atp7aFlox (n = 4) and Atp7b ΔDbh (n=4) and Atp7bFlox (20 weeks) (b) Quantification of DBH
normalized to Na+/K+ ATPase shows reduced expression in Atp7b ΔDbh compared to the Atp7bFlox
controls. Statistical significance was determined using GraphPad Prism version 10 software using an
unpaired Student’s t-test with Welch’s correction. *p < 0.05,
**p < 0.01, ns = not significant .
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Fig S5: Inactivating copper transporters in Dbh neurons affects brain and serum Norepinephrine levels.
(a, b) LC–MS analysis of whole -brain homogenates shows no significant change in serotonin levels in
Atp7aΔDbh (a) or Atp7bΔDbh (b) relative to LoxP/LoxP controls (20 weeks, n = 5). (c) Brain dopamine (DA)
levels are significantly elevated in Atp7aΔDbh mice compared to Atp7aFlox. Data are mean ± S.E.M.
Statistical significance was determined using unpaired two - tailed Student’s t-test with Welch’s
correction; *p < 0.05, **p < 0.01, *** p < 0.001.
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Fig S6: Immunohistochemistry was performed on 30 µm -thick coronal brain sections using a sheep anti -
tyrosine hydroxylase antibody. Tyrosine hydroxylase -positive regions were identified and isolated using
Zeiss Laser Capture Microdissection (LCM). The dissected t issues were subsequently subjected to LC -
MS-based proteomic analysis.
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Fig S7: Immunostaining for SNCA (red) in Atp7b ΔDbh shows upregulation of SNCA in TH+ve (green)
noradrenergic neurons in the LC region compared to the Atp7bFlox controls (20 weeks)
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Fig S8: Conditional inactivation of Atp7a in Dbh neurons disrupts systemic energy metabolism. Whole -
body metabolic parameters were measured in wild -type (black), Atp7a ∆Dbh , and Atp7b∆Dbh male mice
using the Comprehensive Lab Animal Monitoring System (CLAMS; Columbus
Instruments) over a continuous 48 -h recording period following 24 h acclimatization. (a) Oxygen
consumption (VO₂) and (b) carbon dioxide production (VCO₂) normalized to either lean mass or body
weight. (c) Respiratory exchange ratio (RER). Light and dark p hases are indicated, and whole -day
averages are shown. Data represent mean ± SEM, with individual animals shown as dots. Statistical
analyses were performed using two -way ANOVA followed by Tukey’s multiple comparison test; *p <
0.05, **p < 0.01, ***p < 0.0 01, ns = not significant
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Fig S9: Weight of adipose tissues isolated from mice kept at room temperature (22 -24⁰ C)
(a) BAT from Atp7aΔDbh animals shows significantly increased weight compared to the Wild type (20
weeks). Atp7bΔDbh did not show any significant change (b) iWAT (c) gWAT did not reveal any significant
difference in adipose tissue weight in mutants compared to the wild type controls. Data were represented
as Mean ± SEM. Statistical significance was determined using Grap hPad Prism version 10 software using
an unpaired Student’s t-test with Welch’s correction.
*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant.
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Fig S10: Downregulated thermogenic gene expression in adipose tissues in Atp7a ΔDbh and Atp7bΔDbh
mice following cold exposure.
(a) Immunohistochemistry for UCP1 of adipose tissues, such as BAT, gWAT and iWAT shows intense
DAB staining in Atp7aFlox animals while Atp7a ΔDbh shows minimal staining suggesting reduced
expression of UCP1 following acute cold stress; n=3. (b, c) Atp7a ΔDbh mice (n=5) show reduced PGC1α
and UCP1 mRNA expression in BAT compared to Atp7aFlox mice (n=4) normalized to GAPDH mRNA
expression. (e) Immunohistochemistry for UCP1 of adipose tissues, such as BAT, gWAT and iWAT shows
intense DAB staining in Atp7bFlox an imals while Atp7bΔDbh shows minimal staining suggesting reduced
expression of UCP1 following cold exposure; n=3). Statistical significance was determined using
Graphpad Prism Version 9, using an unpaired two -tailed Student’s t-test with Welch correction; P < 0.05,
P < 0.01.
Atp7b ΔDbh
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Fig S11: (a) Body weight of Atp7a∆Dbh kept at prolonged thermoneutrality (30 °C) shows a similar trend
to that of Atp7aFlox (b) Adipose tissue morphology isolated from Atp7a∆Dbh and Atp7aFlox at
thermoneutrality. Brown Adipose tissue (BAT) seems to be pale and enlarged. iWAT and gWAT seem to
be comparable between Atp7a∆Dbh and Atp7aFlox. (c-e) Adipose tissue weight isolated from Atp7a∆Dbh and
Atp7aFlox mice kept in prolonged thermoneutrality (30⁰C). Data were represented as Mean ± SEM.
Statistical significance was determined using GraphPad Prism version 10 software using an unpaired
Student’s t-test with Welch’s correction.
*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant.
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Fig S12: Uncropped immunoblot showing (a) Na +K+ATPase and (b) DBH from the membrane fraction
from whole brain homogenate. (c) Immunoblot for TH from soluble and membrane fractions from whole
brain homogenate.
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Table S1: Elemental quantification at LC region in brain sections (copper is
highlighted in blue)
Genotype Element LC-Left LC-Rright LC AVG
Wild type 1 Fe56_ppm 26.06644311 30.94934954 28.5079
Cu63_ppm 13.23363265 12.76365315 12.99864
Zn66_ppm 29.26250966 35.37463234 32.31857
Wild type 2 Fe56_ppm 24.13445349 22.82077292 23.47761
Cu63_ppm 8.453597428 7.352046195 7.902822
Zn66_ppm 26.54174485 25.39997018 25.97086
Wild type 3 Fe56_ppm 30.4119277 20.06864234 25.24029
Cu63_ppm 25.06456501 17.93140846 21.49799
Zn66_ppm 49.07467499 24.67689718 36.87579
Wild type 4 Fe56_ppm 30.55253144 28.13670101 29.34462
Cu63_ppm 10.92706818 11.44964021 11.18835
Zn66_ppm 27.39776815 27.6259467 27.51186
Atp7aΔDbh _1 Fe56_ppm 17.03560611 16.06287638 16.54924
Cu63_ppm 4.314214862 3.69060261 4.002409
Zn66_ppm 11.35299273 10.63358884 10.99329
Atp7aΔDbh _2 Fe56_ppm 7.887174834 9.943505808 8.91534
Cu63_ppm 2.48685707 3.316787145 2.901822
Zn66_ppm 7.346034496 8.684080172 8.015057
Atp7aΔDbh _3 Fe56_ppm 15.37261191 15.99855668 15.68558
Cu63_ppm 5.032425899 4.320818919 4.676622
Zn66_ppm 12.05653024 15.84153393 13.94903
Atp7bΔDbh _1 Fe56_ppm 41.54731144 34.726308 38.13681
Cu63_ppm 14.85223744 8.853790876 11.85301
Zn66_ppm 38.09642812 32.34389281 35.22016
Atp7bΔDbh_2 Fe56_ppm 33.00461541 34.67047944 33.83755
Cu63_ppm 13.94175298 17.03608233 15.48892
Zn66_ppm 38.49497998 39.02257119 38.75878
Atp7bΔDbh_3 Fe56_ppm 42.87421338 38.52041995 40.69732
Cu63_ppm 12.99967127 8.379113077 10.68939
Zn66_ppm 34.38534161 34.52487674 34.45511
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprintthis version posted January 16, 2026. ; https://doi.org/10.64898/2026.01.15.699802doi: bioRxiv preprint
Table S3: Primers used for mouse genotyping and qPCR
Gene Forward Primer Reverse Primer
Atp7b
Flox
AT1:
5’-GTTCCACAGAAACTATATGCCTGGG-3’
SDL2:
5’-GACAATACTACACTGACCATATTCA-3’
Atp7b
Flox
NDEL1:
5’-CGTCATAGCAAAGCTTGGTAACC-3’
NDEL2:
5-’CTTAAGTGCTGGATATGGGCATG-3’
Dbh-Cre Cre5:
5’-AATGCTTCTGTTCCGTTTGCCCGGT-3’
Cre3:
5’-CCAGGCTAAGTGCCTTCTCTACA-3’
Pdk4: 5′-GTTCCTTCACACCTTCACCAC-3 5′-CCTCCTCGGTCAGAAATCTTG-3′
Ucp1 5′-TGGAGGTGTGGCAGTGTTCAT-3′ 5′-TGACAGTAAATGGCAGGGGAC-3′
Pgc1α 5′-GGAGCCGTGACCACTGACA-3′ 5′-TGGTTTGCTGCATGGTTCTG-3′
Gadd45g 5′-TTCGTGGATCGCACAATGACT-3′ 5′-GGACTTTGGCGGACTCGTAGA-3′
Dio2 5′-TCCCTCACCCCCCTCCCAACC-3′ 5′-GCCCCATCAGCGGTCTTCTCC-3′
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprintthis version posted January 16, 2026. ; https://doi.org/10.64898/2026.01.15.699802doi: bioRxiv preprint
45
Table S4 Antibodies used in immunofluorescent and immunoblot experiments
Antibody Host
animal
Dilution Vendor
Anti-tyrosine hydroxylase Sheep Western blot: 1:5000
IF/IHC: 1:400
NB300-110
Novus Biologicals
Anti-Dopamine-β- hydroxylase Rabbit Western bot: 1:5000
IF: 1:400
Gifted by Dr. Betty Eipper
Sodium Potassium
Atpase α1
Mouse Western blot: 1:
10,000
sc-21712, Santa -Cruz
Anti-UCP1 Rabbit Western blot: 1: 5,000
IHC: 1:300
23673-I-AP, Proteintech
Anti-P62/SQSTM1 Rabbit Western blot: 1:10,000
IF: 1:300
A19700, Abclonal
Anti-Iba1 Rabbit IF: 1:300 GTX635363, Genetex
Anti-Atp7a Rabbit IF: 1:50 HP8040, Hycult
Anti-Atp7b Rabbit IF: 1:200 ab124973, Abcam
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprintthis version posted January 16, 2026. ; https://doi.org/10.64898/2026.01.15.699802doi: bioRxiv preprint