A Natural Programmable Metamaterial Controls 3D Curvature of Compound Eyes

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Abstract

The panoramic vision of the convex compound eyes, common to insects and crustaceans, relies on micrometer-scale curvature variations 1 . These variations create specialized visual zones adapted to specific tasks, including detecting prey, mates, or predators 2,3 . However, the mechanisms by which such fine-scale curvature is encoded during development remain unknown. Here we show that the developing eye of Drosophila melanogaster functions as a natural metamaterial that programs the organโ€™s precise 3D curvature. We discover a supracellular triangular mesh in the basal retina with a specific pattern of triangles sizes. Computational simulations demonstrate its role directing the small scale curvature variations of the eye. Genetic disruption of this micropattern prevents local curvature establishment. Furthermore, the presence of a homologous mesh-curvature relationship in Drosophila mauritiana indicates evolutionary conservation of this mechanism. These results reveal a novel mechanism of morphogenesis control in which the supracellular 2D patterning give rise to a biological programmable metamaterial that encodes 3D curvature with great precision 4 . Our in vivo finding offers a novel framework for the design of shape-programmable 3D biological surfaces with broad implications from synthetic morphogenesis to clinical applications.
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Abstract

The panoramic vision of the convex compound eyes, common to insects and crustaceans, relies on micrometer -scale curvature variations 1. These variations create specialized visual zones adapted to specific tasks, including detecting prey, mates, or predators 2,3. However, the mechanisms by which such fine -scale curvature is encoded during development remain unknown. Here we show that the developing eye of Drosophila melanogaster functions as a natural metamaterial that programs the organโ€™s precise 3D curvature. We discover a supracellular triangular mesh in the basal retina with a specific pattern of triangles sizes. Computational simulations demonstrate its role directing the sm all scale curvature variations of the eye. Genetic disruption of this micropattern prevents local curvature establishment. Furthermore, the presence of a homologous mesh -curvature relationship in Drosophila mauritiana indicates evolutionary conservation of this mechanism. These results reveal a novel mechanism of morphogenesis control in which the supracellular 2D patterning give rise to a biological programmable metamaterial that encodes 3D curvature with great precis ion4. Our in vivo finding offers a novel framework for the design of shape-programmable 3D biological surfaces with broad implications from synthetic morphogenesis to clinical applications. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 2 Main Morphogenesis, the controlled shaping of living materials, is essential for the correct organization and function of complex organs. A paradigmatic example of how form impacts function, is the insect compound eye, a n optical device of great precision . It consists of a crystalline packing of unit eyes, called ommatidia, into a convex, dome -like structure (Fig. 1a,b). Each ommatidium comprises a central photodetection cartridge capped by a facet lens and ensheathed by a layer of ancillary cells (Fig. 1c ). Importantly, curvature can vary across the eye, and this curvature anisotropies often differ between species 1. Curvature variation modifies visual performance: zones of low curvature focus many ommatidia onto a narrow region, resulting in high spatial-resolution vision, while those with high curvature expand the field of view. The combination of curvature and len s diameter, with larger lenses providing greater light sensitivity, gives compound eyes multiple optical properties. These specialized regions support predation, mating, or escape responses, which are all vital to the animal2,3 (Fig. 1d). Therefore, there must be mechanisms responsible for controlling the local curvature of compound eyes, as this trait critically impacts their visual performance. The development of the compound eye is best understood in the fruitfly Drosophila melanogaster5-7. Cell differentiation and patterning of the retina into the mosaic of ommatidia starts in the late larval stage and continues after the larva begins its metamorphosis, in the early pupa. It is also during pupal life that the retina morphs into a 3D optica l dome (Fig. 1e). This transformation occurs in three major steps. First, the thin pupal retinal epithelium becomes curved around 20 hours after pupa formation (hAPF), under the action of hydrostatic pressure which builds within the pupa 8. Then, at around 45โ€“50 hAPF, ommatidial ancillary cells secrete the corneal lens, a hard polymer that coats the apical surface of the epithelium. Therefore, the final shape of the eye, including its local curvature anisotropies, is fixed by this time. Fin ally, starting at 55 hAPF, the retina thickens (up to 100 ยตm) as the ommatidial cells extend and their basal surfaces contract, finalizing the morphogenesis of a functional eye 8-11. By the end of pupal development, the adult Drosophila eye shows a species -specific, stereotypic curvature (Fig. 1a,b). How this curvature is encoded in the fabric of the retinal tissue is not known. A patterned triangular mesh tiles the pupal retina. Early in pupal development, retinal cells acquire their position and remodel their morphology to shape the ommatidium as a 3D prism (Fig. 1f and Extended Data Fig. 1; 9,12,13). At this stage, apical (top) confocal views show the hexagonal lattice of ancillary interommatidial cells (IOCs) consisting of the secondary (2ยบPC) and tertiary pigment cells (3ยบPC), the four lens secreting cone cells and the sensory bristle cells comple xes (Fig. 1g and Extended Data Fig. 1). Basal (bottom) confocal views show the cellular profiles of the IOCs coordinating their attachment around the afferent photoreceptor axons. In this organization, the IOCs form supracellular rings, called โ€œgrommetsโ€, rich in extracellular matrix (ECM), which act as portholes through which the photoreceptor axons exit the retina 9,12,13. Upon examining this basal surface, we observed a new level of organization: the elongated basal feet of the 2ยบPCs form triangles with the grommets as vertices, creating a continuous triangular mesh that spans the entire tissue (Fig. 1h). .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 3 Mechanical metamaterials are designed structures that consist of repetitive connected units. They are called โ€œmetaโ€materials because their unique mechanical properties come from how the units work together, not just from the material they are made of 4,14,15. Combining physics engineering and computer science it has been possible to design programmable metamaterials, where the distribution of the units in 2D can control the 3D shape as loading is applied to the metamaterial4,16. One type of programmable metamaterials are bidimensional meshes in which the unit elements are triangles. In these โ€œ2D -triangular meshesโ€ local curvature can be programmed by rationally varying the size of the triangles throughout the mesh17-19 (Box). The similarities between these metamaterials and the multicellular pattern of the retina led us to hypothesize that the developing compound eye might behave like a natural metamaterial, where the basal triangular mesh formed by the 2ยบPC would encode local curvature information. For this hypothesis to be true, three conditions must be met. First, the triangles of the mesh should be distributed across the 2D retina in a non -uniform, stereotyped pattern. Second, this 2D micropatterning should be instructive in generating the species-specific Drosophila 3D eye curvature. And third, perturbing the integrity of the triangular mesh should result in the eye losing its species-specific curvature. To analyze the pattern of triangle size of the basal mesh, we imaged and segmented the basal surface of pupal retinas before lens secretion. Meeting our first condition, we found the size of the triangles defined by the lattice of 2ยบPCs was distributed as a gradient of increasing size from dorsal/posterior to ventral/anterior across the retina (Fig. 1i, Extended Data Fig. 1 and Methods). Therefore, the mesh of triangles is micropatterned. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 4 Fig. 1. A supracellular triangular mesh patterns the basal pupal retina of Drosophila. (a and b) D. melanogaster compound eye. Lateral (a) and frontal (b) views (b, eye pseudocolored in light pink). (c) Schematic of an ommatidium with all major cell types labeled. (d) Eye cross- section illustrating how curvature affects field of vision and image resolution; ฮ”ฮฆ is the interommatidial angle. (e) Developmental timeline of eye morphogenesis at 25ยฐC, and major milestones; hAPF: hours after pupa formation. (f) 3D reconstruction of an ommatidium. Apical (left) and basal (right) views. 1ยบPC (light pink), 2ยบPC (pink), 3ยบPC, (yellow) and bristle cell complex (grey). PC: Pigment Cell. (g and h) Apical (g) and basal (h) confocal views through a 42 hAPF retina. Ommatidia form a hexagonal lattice apically (cyan hexagon). Orange rings mark the position of the grommet (h), the photoreceptorsโ€™ axon exit point, which in more apical sections aligns wit h the longitudinal axis of the ommatidium (g). Basally, elongated 2ยบPC profiles (pink) form a triangular mesh hinged at the grommets. The derived triangles (green) overlap the basal cell surfaces of the bristle cell complex (pseudocolored in grey), complementary to the 3ยบPC profiles (yellow). ( i) View of a whole 42 hAPF retina with superimposed triangular mesh. Triangle size is color -coded (green -to-purple), revealing a dorsal/posterior to ventral/anterior gradient of increasing triangle size. A, anterior; P posterior. Scale bars: a, i = 100 ยตm; g, h = 10 ยตm. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 5 The patterned triangular mesh encodes curvature Next, to test whether the micropatterning of the 2D triangular mesh encodes the curvature of the Drosophila eye, we developed a physical model of this mesh. Using this model, we could program any distribution of triangle size within a given perimeter and simulate the resultant 3D curvature upon applying pressure to the mesh (Box and Supplementary Methods). To analyze and compare curvature between samples, we used a Gaussian curvature-based metric20 (Box, Supplementary Table 1 and Methods). Finally, as our goal was to compare computational and biological structures, we developed a computational pipeline to segment images of adult eyes, enabling precise measurement of local curvature (Fig. 2a,b, Extended Data Figs 2 and 3, Supplementary Table 2, Supplementary Video 1 and Methods). .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 6 Box. Generation and curvature quantification of 3D surfaces . (a) To compare dome -like surfaces such as the Drosophila eye, it is necessary to evaluate the 3D curvature of the entire surface. Therefore, we calculated the Gaussian curvature distribution across the surfaces of .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 7 interest. With this method, each curved surface is divided into ten concentric regions, and the integral of the dimensionless Gaussian curvature is calculated within each region (see Methods and Supplementary Methods ). (b) As reference shapes, we use three idealized 3D surfaces: hemisphere, hemi -ellipsoid, and saddle. These illustrate typical curvature types: constant positive, varying positive, and negative curvature, respectively. The rigid perimeter is the same for all three patterns. (c) Each shapeโ€™s curvature is represented as a set of ten values (one per region), generating a Gaussian curvature profile (see Methods). The pairwise Gaussian metrics between the three reference shapes are shown in (b). The hemisphere and hemi -ellipsoid are similar (lower value), while the saddle is distinctly different from both. ( d) To model curved metamaterial-like tissue formation, we apply pressure on a 2D triangular mesh enclosed in an elliptical rigid frame. We illustrate the differences in attained curvature using three patterns of triangle size: Uniform: identical triangle sizes (blue); Gradient: triangle sizes increase linearly from the equator toward the poles (orange); Discontinuous: same as the gradient but homogeneously removing 20% of the triangles in the upper bottom regions. Each 2D mesh is inflated over a series of computational iterations, and the resulting 3D shape is then processed for curvature analysis (Extended Data Fig. 3). The panel shows side views (yz and xz) of the processed surfaces generated by each pattern, at 50 (lighter colors) and 150 (darker colors) iterations. The x z views highlight overall shape and fine irregularities. ( e) The Gaussian curvature profiles of the uniform (cyan/blue) and gradient (orange/red) surfaces are plotted after 50 and 150 iterations. The gradient pattern yields very similar 3D curvatures at both steps (Gaussian metric < 0.1). In contrast, the uniform pattern develops more noticeable curvature differences between 50 and 150 steps (Gaussian metric = 0.29), reflecting emerging irregularities during inflation. (f) Final Gaussian curvature profiles after 150 iterations for the three patterns showing poor correlation between them. Their pairwise Gaussian metric values are indicated in (d), reflecting the divergence of their 3D curvatures. To explore the link between triangular mesh and curvature, we programed three types of initial, 2D triangle patterns: (i) wild -type Drosophila melanogaster patterns derived from 42 hAPF retinas, โ€œsWTโ€ ; (ii) uniform patterns with identical triangles, โ€œsITโ€ ; and (iii) continuous, rubber-like fine meshes composed of smaller triangles with scrambled orientations, โ€œsRubโ€ (see Methods for a detailed description; Fig. 2c -e, Extended Data Figs. 2 and 3). sRub was included to mimic the behavior of a homogeneous material21. To simulate the adult Drosophila eyes, we deployed each mesh within the perimeters measured from the pupal retinas, inflating each mesh until they best matched the mean depth of the wild -type eyes (Fig. 2b-e, Extended Data Figs. 2 and 3, Supplementary Video 2, Methods, Supplementary Tables 2 and 3). Finally, we computed the Gaussian metric in a pairwise manner ( Supplementary Table 4). We found that local curvature of WT eyes was comparable across our samples (low values of Gaussian metric of โ€œWT vs WTโ€ in Fig. 2f, Extended Data Figs. 1 and 2, Supplementary Table 5, Methods). Remarkably, and validating our computational model, our analysis showed the curvature of the simulated WT (sWT) was very similar to the WT, while those sIT or sRub were significantly different (Fig. 2f, Supplementary Table 5, Methods). Therefore, only the triangle micropattern of Drosophila retinas was able to morph into the adult 3D eye curvature. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 8 To further challenge our hypothesis, we tested whether there was a correlation between eye curvature and the pattern of triangles in the retinal mesh in other fly species. For this, we chose to examine the eye of Drosophila mauritiana, a species that diverged from D. melanogaster about 4 Myrs ago22 (Fig. 2g-k, Extended Data Fig. 4). D. mauritiana has larger eyes (Fig. 2g, Extended Data Fig. 4) as its retinas comprise more and larger ommatidia when compared to D. melanogaster23. The comparison of D. mauritiana (โ€œMauโ€) and D. melanogaster (โ€œWTโ€, โ€œMelโ€ in Fig. 2h) eyes showed that, despite their size difference, they have very similar curvature (Fig. 2k, Supplementary Tables 2 and 5). According to our hypothesis, the retina of D. mauritiana should present a patterned triangular mesh similar to that of D. melanogaster, a prediction we verified after analyzing the basal surface of D. mauritiana pupal retinas (Fig. 2i; compare with Fig. 1i). Moreover, incorporating the segmented triangle micropatterns into our computational model predicted the curvature of the D. mauritiana eye with great precision (Fig. 2k; see also Extended Data Fig. 4, Supplementary Table 5). These results further indicate that the 2D patterned triangular mesh encodes eye local curvature across Drosophila species. Fig. 2. A physical model reproduces retinal curvature across Drosophila species. (a) Lateral view of a wild -type D. melanogaster head imaged using light -sheet microscopy. ( b) Segmented eye surface (WT, frontal and oblique views) extracted from (a). (c) A patterned 2D triangle mesh extracted from a D. melanogaster pupal retina is used to generate a simulated 3D surface (sWT; see Methods). ( d) For comparison, a 2D mesh consisting of triangles uniform in size, generates the sIT surface. (e) A third simulation (sRub) mimics a rubber-like .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 9

Material

with the same perimeter. (f) Pairwise comparisons of the resulting 3D surfaces using the Gaussian metric (see Box); each dot represents one comparison. sWT is the only simulation that reproduces WT curvature. ( g) Lateral view of an adult D. mauritiana head. (h) Frontal view of segmented D. mauritiana (Mau, pink) and D. melanogaster (Mel, grey) eyes, superimposed for comparison. ( i) The D. mauritiana pupal retina displays a triangle size gradient similar to D. melanogaster . ( j) sMau: the simulated 3D surface based on the D. mauritiana triangle pattern. ( k) D. melanogaster (WT) and D. mauritiana (Mau) eyes are similar in curvature and sMau accurately reproduces the curvature of the adult D. mauritiana eye, showing a strong match with empirical data. Scale bars: a, g, i = 100 ยตm. Triangle size colored according to scale in (c), (d) and (i and j). Data shown as mean ยฑ s.d. Gaussian metric distributions statistical tests: ns, not significant; *p<0.05; ***p<0.001. Disruption of the triangular mesh alters curvature of the compound eye. In our hypothesis, disruption of the 2D triangular mesh lining the basal surface of the retina should preclude curvature programming. As a consequence, the resulting eyes should lose their stereotypic curvature. To disrupt this mesh, we used RNAi (IR) to t arget the expression of Talin, a protein required for Integrin -mediated attachment of the 2ยบPC s to the grommet12,13,24 (genotype GMR-G4>talin_RNAi, โ€œtalin-IRโ€, see Methods). In this genotype, the 2ยบPC s lose their attachment to the grommets, which causes the disconnection of the mesh and affects the basal geometry of these cells (Fig. 3a and Extended Data Fig. 5). Despite these basal disruptions, apical patterning remains largely unaffected (Fig. 3b; and 12,13,25). While the talin- IR eyes were shaped as a dome-like structure like the WT (Fig. 3c and d, adult eye labelled as Talin in the figure), their curvature was markedly different from that of WT eyes (Fig. 3e -h, Supplementary Table 5). Notably, the disruption of the mesh produced large curvature variability (Fig. 3h, Supplementary Table 5), indicating that the triangular mesh is critical for the robustness of the 3D curvature. Breaking mesh connectivity should result in the retina losing the metamaterial proper ties โ€“i.e talin-IR retinas should behave like a homogeneous material. To investigate this prediction, we simulated 3D curvature using the rubber material, described in Fig. 2e, which we framed within the perimeters of talin-IR retinas (โ€œsTalinโ€, Extended Data Fig. 5 and Methods). This simulation led to a similar increase in variability to that we observed for adult Talin eyes (Fig. 3i and Supplementary Table 5). Altogether, our

Results

support the concept that the metamaterial properties of the developing Drosophila retina, encoded in the patterned triangular mesh, are responsible for the reproducibility of the 3D curvature of the compound eyes. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 10 Fig. 3. The patterned triangular mesh encodes for local curvature. (a and b) Confocal views through a talin-IR pupal retina stained with phalloidin to visualize the F-actin at the basal (a) and apical (b) surface of the retina. Orange ring marks the ommatidial central axis. (c and d) Lateral (c) and frontal (d) views of a talin-IR adult eye (โ€œTalinโ€ in the figure), showing that these eyes are curved and present minor alterations. (e) Reference Gaussian curvature profiles for a WT eye from a female (grey) and a male (black). Their similarity is indicated by a very low value of their pairwise Gaussian metric (0,07). (f) Combined dataset of Gaussian curvature profiles including a WT and three Talin surfaces, used to compute the pairwise Gaussian metric. Curvature of Talin eyes is consistently distinct from WT. ( g) 3D reconstructions of three segmented Talin adult eyes. Bronze, italicized numbers indicate the Gaussian metric calculated from pairwise comparisons between each Talin surface and a wild-type (WT) male retina (see f). Gold numbers show the metric between each pair of Talin surfaces. ( h) Distribution of Gaussian metrics for these comparisons, showing that Talin eyes differ significantly from WT and display higher variability. ( i) Equivalent comparisons using computationally generated reference surfaces confirm these trends. Scale bars: a, b = 10 ยตm; c = 100 ยตm. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 11

Discussion

Since Dโ€™Arcy Thompson's foundational work, it has been clear that understanding biological form requires examining the interplay between the principal forces and material properties at work during development 26. During animal development, there are multiple examples where the physical forces that drive morphogenesis are spatiotemporally controlled at supracellular scales27,28. This idea is being pursued to engineer shapes in artificial tissues in vitro, through the programing of force asymmetries or microfabrication of 2D and 3D environments29,30. Here we have found that the compound eye uses a novel strategy to program a 3D shape in vivo: a uniform hydrostatic pressure acts on a patterned non -homogeneous tissue, the developing retina. This morphogenetic mechanism derives from two linked properties: the metamaterial quality of the tissue and the fact that it can be programmed genetically. The metamaterial behavior emerge from the specific mechanical coupling between 2ยบPCs, which is integral to the whole epithelium 11. The connection of these cells through the grommets gives rise to the triangular mesh. The second part is the ability of locally controlling the size of the triangles, making it possible to establish a pattern responsible for the micrometer-scale, species-specific curvature anisotropies of the eye. A key question moving forward is which genetic mechanisms translate positional information into cell size regulation. The use of synthetic metamaterials with rationally-designed properties is fast expanding31, with new applications such as patches to give structural support to infarcted myocardium, vascular stents or wound dressings to aid skin healing4. To our knowledge, the developing retina of flies is the first instance of a natural metamaterial in which its properties are programmed genetically. By revealing how local geometry can be embedded in tissue architecture, this work introduces a novel strategy for the rational design of shape -programmable 3D biological surfaces, with potential implications extending from synthetic morphogenesis to clinical applications. In addition to specifying the target morphology, a problem biological systems face is that of precision -reaching the species-specific morphology despite intrinsic and extrinsic noise. The need for precise curvature control has been made especially evident in studies of the Drosophila eye, where even subtle morphological defects can compromise optical function32,33. Moreover, local curvature variation must occur at the microscale, within a tissue only a few hundred microns across. Waddington proposed that phenotypic robustness should be the result of control mechanisms operating during development 34. The phenomenon we describe here represents such a mechanism, where the robust and precise control derives from the metamaterial properties of the retina. From a design perspective, it is not clear why the triangular mesh is located at the basal surface rather than at the apical one. One possibility is that the basal surface is better suited for maintaining and guiding shape as it is directly exposed to the constant hydrostatic pressure, which during development has been shown to promote retinal curvature8. Once the apical lens is deposited and hardens, it likely serves as a permanent scaffold preserving retinal shape into adulthood. We also observed that the gradient in triangle size, from posterior/dorsal to anterior/ventral, mirrors a corresponding gradi ent in increasing lens size described in several Drosophila species, including D. mauritiana and D. simulans35. Since both curvature and lens diameter influence visual acuity, it is plausible that a control of ommatidial cell size co -regulates these two traits simultaneously. Considering the long evolutionary history of the compound eye, dating back to the Cambria n and coinciding with .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 12 the explosive diversification of arthropods (reviewed in 36), it is tempting to speculate that mechanisms of curvature control and visual optimization, such as the one described here, may have played a role in the evolutionary success of insects and crustaceans.

References

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Trends in cell biology 33, 95โ€“111 (2023). https://doi.org/10.1016/j.tcb.2022.06.013 31 Vyavahare, S., Mahesh, V., Mahesh, V. & Harursampath, D. Additively manufactured meta-biomaterials: A state-of-the-art review. Compos Struct 305 (2023). https://doi.org/ARTN 11649110.1016/j.compstruct.2022.116491 32 Franceschini, N. & Kirschfeld, K. [Pseudopupil phenomena in the compound eye of drosophila]. Kybernetik 9, 159โ€“182 (1971). https://doi.org/10.1007/BF02215177 33 Franceschini, N. & Kirschfeld, K. [In vivo optical study of photoreceptor elements in the compound eye of Drosophila]. Kybernetik 8, 1โ€“13 (1971). https://doi.org/10.1007/BF00270828 34 Waddington, C. H. Canalization of development and the inheritance of acquired characters. Nature 150, 563โ€“565 (1942). 35 Buffry, A. D. et al. Evolution of compound eye morphology underlies differences in vision between closely related Drosophila species. BMC Biol 22, 67 (2024). https://doi.org/10.1186/s12915-024-01864-7 36 Nilsson, D. E. & Kelber, A. A functional analysis of compound eye evolution. Arthropod Struct Dev 36, 373โ€“385 (2007). https://doi.org/10.1016/j.asd.2007.07.003 .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 14 .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 15

Methods

Fly strains & genetics Flies were raised on standard food at 25ยฐC. The following fly strains were used: hth::YFP (Kyoto:115109)37,38, GMR-Gal439 (FlyBase: FBgn0020433; S0092-8674(00)81385-9 [pii] ), UAS-talin RNAi (BDSC:33913)40, D. mauritania Tam-16 (gift from Alistair McGregor, Durham University, UK)35. Antibody staining and imaging Retinas of appropriately staged animals were dissected in PBS on ice and fixed in 4% paraformaldehyde for 20 minutes at room temperature (RT). Retinas were washed in PBS - Triton 0.3% (PBS-T) then stained with primary antibody in PBS-T for 2hrs at RT or overnight at 4ยฐC. Retinas were washed in PBS -T and then stained with secondary antibodies for 2h at RT or overnight at 4ยฐC. Retinas were mounted in Vectashield (Vectorlabs) 41. The following primary antibodies were used: Mouse N2 7A1 anti-Armadillo (1:200), mouse EXD B11M anti- Extradenticle (1:5) and rat DCAD2 anti-ECadherin (1:50). N2 7A1 Armadillo was deposited to the DSHB by Wieschaus, E. (DSHB Hybridoma Product N2 7A1 Armadillo) 42. White, R. (DSHB Hybridoma Product EXD B11M), deposited EXD B11M to the DSHB43. DCAD2 was deposited to the DSHB by Uemura, T. (DSHB Hybridoma Product DCAD2)44. Anti-mouse or anti-rat secondary antibodies conjugated to CF 405S (Biotium, 20830) were used at 1:200 as appropriate, and ATTO 565 phalloidin (Sigma, 94072) was used at 0.4ยตM to visualize F-actin. Images of fixed retinas were acquired on a Zeiss 900 confocal mic roscope using the tile scan function. Preparation of adult heads and light sheet confocal imaging This protocol, as the recipes used, are based on Susaki45,46. All incubations were performed at room temperature (RT) with agitation. Dissection: Flies were euthanized in CO2 or on ice. They were then decapitated and the heads placed in a well containing 1X PBS. The proboscides were removed to allow further diffusion between the external medium and the interior of the head capsules. Fixation: The specimens were fixed in 4% paraformaldehyde in ethanol for 3 -4 hours and then washed three times in pure ethanol for 1 hour each time. Bleaching: The heads were placed in tubes containing 10% H2O2 in ethanol until they were completely bleached (the time is variable and depends, for example, on whether the proboscis was fully removed or not). (Caution: This reaction produces oxygen. Leave the tube or well open during the first few hours of this step to allow the oxygen to escape. When the bubbling stops, the lid can be closed). This step may take from several days to 1,5 weeks for adult heads. Change the medium if it becomes pigmented. After completion of bleaching, wash 3 times with PBS 1x 1 h. Clearing: Heads were incubated in 50% Cubic-1/H2O for at least 3-6 hours to overnight. Then, incubated in Cubic -1 for 2 days. Next, incubated in Cubic-2/PBS for at least 3-6 hours to OV and then incubated in Cubic-2 for 2 days. Finally, they were incubated 3 times in glycerol/PBS 50%: first for 3 -4 hours, second for OV, and third for 3-4 hours. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 16 Microscopy was performed with a Zeiss Lightsheet 7 under a 5x objective. The heads were mounted on 1:1 glycerol/PBS columns with 1% w/v low melting agarose. The microscope chamber was filled with approximately 30 ml of 1:1 glycerol/PBS with a refractive index (RI) of 1.41. The software used was Zen Black (imaging) and Zen Blue (manual 3D reconstructions); the laser, 488 nm, which allows imaging of the cuticle autofluorescence. Statistical comparisons and interpretation To evaluate the degree of similarity between simulations and adults (e.g., sWT and WT) we analyzed the statistical differences between the Gaussian metric distributions obtained from WT vs WT and sWT vs WT. In this example, both types of samples presented low values of Gaussian metric, so the absence of statistically significant difference was interpreted as indicating similar curvature between the two types of samples. We applied the same approach to compare the curvature of WT and talin-IR samples. In this case, the distributions of WT vs WT and Talin vs WT were significantly different, with the values for Talin being substantially larger. This result was interpreted as evidence of a difference in curvature and loss of robustness among the Talin samples. The comparative analysis of the different Gaussian curvature profiles vector was conducted using a univariate statistical framework ( Supplementary Tables 5 and 6 ). This approach enables the assessment of whether two datasets originate from populations with similar distributional properties. The protocol consisted of the following steps: 1. Assessment of normality and homogeneity of variance : For each pairwise comparison of Gaussian curvature distributions across genotypes, we first tested for normality using the Shapiroโ€“Wilk test, and for homogeneity of variance using the two- sample F-test. 2. Parametric testing with equal variances: If both normality and equal variances were confirmed, we applied an unpaired t-test to assess differences in the means between the two groups. In case of multiple comparisons having one distribution as control, we applied a parametric ordinary one-way ANOVA test. 3. Parametric testing with unequal variances : In cases where the data were normally distributed but variances differed significantly, the two -tailed Welchโ€™s t-test was employed as a more robust alternative. In case of multiple comparisons having one distribution as control, we applied a parametric ordinary one-way ANOVA test. 4. Non-parametric testing: When the assumption of normality was violated, we utilized the Wilcoxon rank-sum test (also known as the Mannโ€“Whitney U test) to compare the medians of the two groups. In case of multiple comparisons having one distribution as control, we applied a Kruskal-Wallis test. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 17 Segmentation of confocal imaging data from 42hAPF retinas and generation of the triangular mesh. Confocal stacks stained with ATTO 565 phalloidin (F-actin) were used to segment grommets without prior knowledge of retina orientation. Segmentation began with MATLABโ€™s Volume Segmenter (R2021b), followed by a deep learning pipeline based on a 3D U-Net CNN trained on a manually segmented stack47. The resulting probability maps were binarized with custom MATLAB code and manually corrected. Samples requiring excessive manual editing were excluded. Grommet centroids were then extracted and used to construct alpha triangulations via the alphaTriangulation function. To build the retinaโ€™s triangular mesh, we implemented a custom region -growing algorithm. Starting from a manually selected triangle over a bristle cell complex (initial triangle), the algorithm iteratively added non -adjacent triangles until completion of valid triangles set. Remaining triangles were classified as inverse triangles. Surface areaโ€“based color coding was applied to each triangle. For talin-RI retinas ( GMR>talin_RNAi) the segmentation procedure differed from that employed for the wild type D. melanogaster (โ€œWTโ€) and D. mauritania (โ€œMauโ€), since grommets were largely absent, precluding neural network segmentation. These samples were fully segmented manually by delineating boundaries in Volume Segmenter . Boundary coordinates were extracted via custom scripts and used in downstream analyses. Building the different simulations sWT To make the any triangulation, in the case the one defined by the set of valid triangles of WT, sWT, compatible with the finite element method computational model employed in this study48-50 (Supplementary Methods), several preprocessing steps are required: 1. Quadratic Triangulation : We converted the initial triangulation into a quadratic triangulation using a custom MATLAB routine. Each triangle was redefined with six nodes, three at the vertices and three at edge points, yielding two matrices, a coordinate matrix (coordinates) of size and a connectivity matrix (elements) with nodes ordered clockwise51. 2. Dirichlet Boundary Conditions : We imposed these conditions by identifying the boundary nodes using MATLABโ€™s boundary functions and fixing all their degrees of freedom (dofs) to zero. These include three translational displacements along the x, y, z directions (dof = 1, 2, 3) and two rotational displacements about the x and y axes (dof = 4, 5). The conditions were stored in the fixnodes matrix to ensure model stability near boundaries. 3. Nodal points : The external forces were defined for internal (non -boundary) nodes, recorded in the pointload matrix. Initially, forces were applied in the z-direction, later .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 18 updated during iterations to acto normal to each triangleโ€™s surface (Supplementary Methods). sWTi To assess whether the gradient in the triangular pattern encodes the three -dimensional curvature of WT, we generated an inverted control pattern, referred to as sWTi, defined by the set of inverse triangles (Extended Data Fig. 2f,g). Once it was established, the same analytical and computational procedures were applied as used for sWT model. sIT For each of the sWTs, a corresponding uniform triangulation, sIT (Fig. 2d), was generated to create a mesh without spatial gradients in triangle size while preserving the original geometric pattern of valid triangles. The process began by extracting the sWT boundary points and constructing a uniform lattice in the ๐‘ฅ โˆ’ ๐‘ฆ plane. This lattice consisted of two alternating lines of points spaced by the average base ๐‘‘๐‘ and height ๐‘‘โ„Ž of sWT triangles, producing congruent triangles of eqaul รกrea across the domain. Points within the sWT boundary were selected and triangulated similarly tos WT methods, forming the sIT mesh. Since the number of triangles in sIT could differ from sWT, an iterative adjustment of ๐‘‘๐‘ and ๐‘‘โ„Žwas performed until the number of triangles between sWT and sIT is reduced to within 5% (Supplementary Table 3). sRub For each triangulation based on the valid triangle set sWT, a corresponding rubber -like triangulation, sRub (Extended Data Fig. 2h ), was generated to create a spatially continuous, non-structured and homogeneous mesh. Unlike the structured uniform triangulations (sIT), sRub was created using a simpler metho leveraging MATLABโ€™s Partial Differential Equation toolbox to automatically generate scrambled triangles within the sWT boundary. As a result, sRub meshes contained significantly more triangles than sWT, increasing computational demands. To balance simulation accuracy and efficiency, edge lengths were constrained between ๐ป๐‘š๐‘Ž๐‘ฅ = 10 ๐œ‡๐‘š and ๐ป๐‘š๐‘–๐‘› = 5 ๐œ‡๐‘š (Supplementary Table 3). sTalin For the sTalin models, the same meshing procedure described for the sRub models was applied, including the specification of the maximum and minimum target edge lengths, ๐ป๐‘š๐‘Ž๐‘ฅ and ๐ป๐‘š๐‘–๐‘› , respectively ( Extended Data Fig. 5c ). However, in this case, rather than utilizing the boundary of the corresponding sWT model, the triangulation was generated using the manually defined boundary of the talin-RI pupae. .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 19 sMau The same procedure described for the sWT models was applied to Mau samples (Fig 2i). sMau* In the case of the sMau* models, it was necessary to refine the set of valid triangles of Mau samples due to the disruption of the characteristic triangulation pattern in specific regions of the anterior part of the retina (Extended Data Fig. 4f). This disruption resulted in the inclusion of computational triangles that did not accurately represent the basal surface of Drosophila mauritiana pupae. These non-representative triangles, that represent on average the 3% of the total triangles (Supplementary Table 3), were systematically identified based on morphological discrepancies with the expected basal surface geometry and subsequently excluded from the valid sMau triangulation set using a custom MATLAB script. 3D adult eyes image segmentation and postprocessing To segment adult eyes independently from the heads across genotypes, we used the Volume Segmenter application with image data imported via a custom MATLAB script. Manual segmentation was performed followed by linear interpolatio n. The resulting label volumes were binarized and cropped for individual eye processing. A custom MATLAB algorithm extracted the apical surface by converting the segmented volume into a calibrated 3D point cloud. The point cloud was rotated so that the dorso-ventral axis lay in the ๐‘ฅ โˆ’ ๐‘ฆ plane, aligning the apex (the point with the highest ๐‘ง-coordinate) normal with the ๐‘ง-axis. Spatial density was enhanced through interpolation with griddata function. The eye boundary was determined by projecting the point cloud onto the ๐‘ฅ โˆ’ ๐‘ฆ plane and identifying its outer contour. Starting from the apex, the surface was propagated through connected points until the boundary was reached. Final boundary points were added and re-interpolated to yield a continuous apical surface. Although the apical surface of the eye can be extracted from the segmented volume, the resulting representation is not suitable for the computation of dimensionless Gaussian curvature20,52,53. To address these limitations, we developed dedicated MATLAB algorithm that consists of: 1. Point Cloud Downsampling : As proved in 54 the dimensionless Gaussian curvature depends on the distance between a point and its neighbours. A downsampling strategy based on farthest point sampling (FPS)55 was implemented to iteratively select the subset of points that maximized spatial coverage while preserving the surface overall structure. 2. Surface Smoothing: To refine the mesh and reduce noise in the point cloud, we apply a smoothing operation based on Laplacian smoothing, which operates by iteratively adjusting the vertex positions to achieve a smoother surface while preserving the overall geometry. The smoothing process is performed as follows: .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 20 2.1. Adjacency Matrix Construction: At first, the adjacency matrix ๐ด โˆˆ โ„๐‘ร—๐‘ is built. Given the set of vertices ๐‘‰ and faces ๐พ connectivity of the mesh (Supplementary Methods), for each triangular face {๐‘–, ๐‘—, ๐‘˜} โˆˆ ๐พ , the adjacency matrix satisfies that ๐ด(๐‘–, ๐‘—) = ๐ด(๐‘—, ๐‘–) = 1. 2.2. Laplacian Matrix Computation : The Laplacian matrix ๐ฟ is computed using the relation ๐ฟ = ๐ท โˆ’ ๐ด, where ๐ท is the degree matrix, defined as ๐ท = ๐‘‘๐‘–๐‘Ž๐‘”(๐ด โ‹… ๐Ÿ), where ๐Ÿ is a column vector of ones. 2.3. Iterative Smoothing : The vertex positions are iteratively updated using the explicit smoothing scheme: ๐‘‰(๐‘ก+1) = ๐‘‰(๐‘ก) โˆ’ ๐œ†๐ฟ๐‘‰(๐‘ก), (1) where ๐œ† is the smoothing factor, and ๐‘ก denotes the iteration index. A smoothing factor of 0.1 was chosen and a total of 25 iterations are performed. This pair of values were chosen to balance convergence and preservation of geometric features, since small ๐œ† implies that each iteration produces modest change s in vertex positions, thereby avoiding excessive smoothing or distortion. 2.4. Isotropic Explicit Remeshing : Irregular meshes, can introduce significant local distortions in curvature computation56. To address this issue, an isotropic explicit remeshing step is implemented using PyMeshLab57. This remeshing algorithm is based on an energy minimization procedure and only the number of iterations is needed. We set the number of iterations to 25, which is sufficient to reach convergence of the remeshing energy minimum. Measuring dimensionless Gaussian curvature The set of angles formed at vertex ๐‘ฃ๐‘–, by each of the incident triangles, ๐‘‘๐‘–, on it is denoted as {๐›ผ1 ๐‘– , ๐›ผ2 ๐‘– , . . . , ๐›ผ๐‘‘๐‘– ๐‘– }, where each ๐›ผ๐‘— ๐‘– represents the internal angle at ๐‘ฃ๐‘– within the ๐‘—-the incident triangle. According to 53,54,56, the dimensionless Gaussian curvature ๐บ๐‘– over a neighborhood of vertex ๐‘ฃ๐‘– can be approximated by a discrete formulation: ๐บ๐‘– = 2๐œ‹ โˆ’ โˆ‘ ๐›ผ๐‘— ๐‘–. ๐‘—= ๐‘‘๐‘– ๐‘—=1 (2) This formulation may yield misleading results due to inherent geometric and topological characteristics of the mesh such as open boundaries or topological defects. For vertices associated with such irregularities, defined as degenerate vertices, the computed values of ๐บ๐‘– does not reflect the curvature of the surface . These degenerate vertices are identified and removed using a custom-developed MATLAB algorithm: .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 21 1. Detection of Boundary Edges and Vertices: Edges that appear only once in the edge incidence map are classified as boundary edges and its vertices as boundary vertices. To improve curvature accuracy, all vertices in triangles containing any boundary vertex are also excluded from curvature calculations. 2. Degeneracy Filtering Based on Geometric and Angular Criteria : To ensure the integrity of curvature values, additional geometric criteria are enforced to identify degenerate vertices: 2.1. According to 58,59 vertices with any incident angle below 30ยฐ or above 90ยฐ may introduce a bias in ๐บ๐‘–. Although the isotropic explicit remeshing algorithm was applied, occasional violations still occur in regions near the boundary. To account for numerical accuracy, vertices with any incident angle below 33ยฐ or above 87ยฐ are identified as degenerate vertices. 2.2. In pupal samples, certain vertices located near the boundary may escape detection in the preceding filtering steps . Although such instances are infrequent, th ese vertices exhibit geometric characteristics analogous to true boundary points. For that reason, vertices for which |๐บ๐‘–| > 0.01 are also identified as degenerate vertices. 3. Identification of Interior Vertices : Vertices not marked as boundary -related in the previous step are designated as interior vertices. These are the only candidates considered for reliable Gaussian curvature estimation. Shape similarity metric, the Gaussian metric According to20,60 it is possible to define a similarity measure between two geometric models by means of a distance function ๐‘‘(๐ด, ๐ต) that must satisfy the following properties: โ— Non-negativity, ๐‘‘(๐ด. ๐ต) โ‰ฅ 0. โ— Symmetry, ๐‘‘(๐ด, ๐ต) = ๐‘‘(๐ต, ๐ด). โ— Smaller values of ๐‘‘(๐ด, ๐ต), more similar the shapes of ๐ด and ๐ต. As demonstrated in 20,61, the integral of ๐บ๐‘– remains invariant under geometric transformations, so its distribution inherently defines a robust distance function for shape similarity. As described in 20, the computation of that distribution is obtained by p rojecting the mesh vertices onto the ๐‘ฅ โˆ’ ๐‘ฆ plane and transforming the point cloud, along ๐บ๐‘– values, into polar coordinates (๐‘Ÿ๐‘–, ๐œƒ๐‘–), where the origin is defined as the geometric center of the point cloud (๐‘ฅ๐‘, ๐‘ฆ๐‘) and the radial distance is computed as ๐‘Ÿ๐‘– = โˆš(๐‘ฅ๐‘– โˆ’ ๐‘ฅ๐‘)ยฒ + (๐‘ฆ๐‘– โˆ’ ๐‘ฆ๐‘)ยฒ. The vertices are systematically ordered according to their radial distances ๐‘Ÿ๐‘–. To partition the vertex set into ๐‘› concentric regions, we define the ๐‘—๐‘กโ„Ž region as comprising those vertices whose radial coordinates satisfy ๐‘Ÿ๐‘– โˆˆ [๐‘Ÿ๐‘—, ๐‘Ÿ๐‘—+1), where ๐‘Ÿ๐‘— denotes the ( 100(๐‘—โˆ’1) ๐‘› + 1) percentile .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 22 of the distribution {๐‘Ÿ๐ผ}. This procedure yields ๐‘› distinct groups of vertices, denoted as {๐‘ฃ๐‘–}๐‘– โˆˆ ๐ผ1 , {๐‘ฃ๐‘–}๐‘– โˆˆ ๐ผ2, . . . , {๐‘ฃ๐‘–}๐‘– โˆˆ ๐ผ๐‘›, where the index set ๐ผ๐‘— identifies all vertices belonging to the ๐‘—๐‘กโ„Ž radial group. By construction, each group contains an equal number of vertices. For each region ๐ผ๐‘—, the integrated dimensionless Gaussian curvature ๐บ๐‘— ๐‘‡, called Gaussian curvature profile, is computed as follows: ๐บ๐‘— ๐‘‡ = โˆ‘ ๐บ๐‘– ๐‘– โˆˆ๐ผ๐‘— . (3) A vector ๐‘ฎ = [๐บ1 ๐‘‡, ๐บ2 ๐‘‡, . . . , ๐บ๐‘› ๐‘‡ ] is constructed, that represents the surface . Consequently, the problem of comparing original surface meshes is reduced to the comparison of their ๐‘ฎ vectors (Box). To this end, a distance function ๐‘‘๐บ is defined as follows: ๐‘‘๐บ(๐บ1, ๐บ2) = 1 โˆ’ |๐‘Ÿ(๐บ1, ๐บ2)|, (4) where ๐‘‘๐บ โˆˆ [0,1) and |๐‘Ÿ(๐บ1, ๐บ2)| is the absolute value of Pearson correlation coefficient defined as: ๐‘Ÿ(๐บ1, ๐บ2) = ๐‘๐‘œ๐‘ฃ(๐บ1, ๐บ2) ๐œŽ1๐œŽ2 . (5) The distance function ๐‘‘๐บ will henceforth be referred to as the Gaussian metric. Values near zero indicate high shape similarity between meshes, while values near one indicate significant shape dissimilarity (Box). A ccording to 20, ๐‘› โˆˆ [5,10], so we have adopted ๐‘› = 10 to maximize the sensitivity of the Gaussian metric. Matching adult size and selecting the appropriate iteration Following completion of all simulations generated by the computational model, 1000 for sWT, sWTi, sIT, sMau and sMau*, 2000 for sRub and sTalin, the resulting meshes were postprocessed using the same procedure described for adult specimens (Methods, 3D adu lt eyes image acquisition, segmentation and postprocessing). In this context, 75 iterations of the mesh smoothing algorithm were applied. This number was chosen to accommodate the fixed boundary conditions, which impose geometric constraints on curvature near the boundary and within regions that must remain free from negative curvature or irregular meshing artifacts. Given that the employed smoothing technique relies on the adjacency matrix, it enables selective regularization: boundary -adjacent regions are smoothed appropriately, while curvature in unaffected areas is preserved, thereby preventing excessive flattening due to oversmoothing. Among the resulting iterations, it is necessary to select the one that best approximates the morphology of the adult specimens corresponding to the given genotype. This selection process is non-trivial, as the minimum of the Gaussian metric is not guarante ed to be unique, nor does it necessarily yield a configuration that accurately reflects adult morphology .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint 23 (Extended Data Fig. 3c ). This limitation arises because the Gaussian metric, based on the distribution of dimensionless Gaussian curvature, does not account for absolute size. To incorporate both shape and scale, ensuring that the selected iteration reflects not only the curvature distribution but also the physical size of the adult specimens, the following criteria were established to guide the selection of the optimal iteration: 1. Size criterion : To account for adult size, we first assessed whether significant differences existed between the lengths of the major axis in adults and pupae of the corresponding genotype (Supplementary Tables 2 and 3). As no statistically significant differences were observed in either case (Supplementary Table 6), the depth of the raw adults (preprocessing ones) was defined as the difference between the mean depth of the three-dimensional boundary and the depth of the deepest point. For each genotype, the acceptable depth range was defined as the mean adult depth ยฑ one standard deviation. Any simulated specimen whose depth fell within this interval was considered to exhibit a depth -to-axis ratio statistically indistinguishable from that of the adults, thereby satisfying the size criterion (Extended Data Fig. 3b). 2. Gaussian Metric Criterion: For each raw iteration of the simulations (Extended Data Fig. 3a), depth was computed, as the maximum value of the z -coordinate, given that the boundary was constrained to z = 0. Additionally, G was calculated, along with , defined as the mean Gaussian metric from the distribution of adult individuals of the same genotype. This procedure yielded a pair (depth, ) for each iteration. Among the iterations whose depths fell within the genotype -specific confidence interval defined by the size criterion, the one exhibiting the minimum Gaussian metric was selected (Extended Data Fig. 3c), thereby ensuring both geometri c fidelity and curvature-based similarity to the adult morphology.

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ACKNOWLEDGMENTS This work was supported by grants PID2022 -137101NB-I00, AEI/10.13039/ 501100011033/FEDER UE (AEI/MICIN) (LME); PID2021 -122671NB-I00 (AEI/MICIN) (FC); and PID2022 -137101NB-I00 (AEI/MICIN) to JAA -SR. J.G. -G. was funded by a โ€˜Contrato predoctoral para la form aciรณn de doctoresโ€™ (PRE2020 -093682) from the AEI/MICIN. Additional support from the E.U. COST action CA22153 โ€˜European Curvature and Biology Networkโ€™ (EuroCurvoBioNet) to LME, CEX2020 -001088-M (AEI/MICIN) to FC, and LifeHUB research consortium (PIE -202120E047-ConexionesLife (CSIC)) to LME and FC is acknowledged. Work in the Pichaud lab is funded by grants from the MRC (MR/Y012089/1) and the BBSRC to FP and RW (BB/R00069). The Drosophila mauritiana Tam16 wild type strain was a gift from Alistair McGregor (Durham University, UK). Confocal Light Sheet imaging was carried out at ALMIA, CABD. AUTHOR CONTRIBUTIONS LME, FC, and FP formulated the project. JG -G performed the computational design assisted by JAS-H. RW and JT performed the fly experiments, processed the samples and obtained the images. JG -G processed the images and performed the computational experiments . JAA -S assisted with image processing. JG-G, RW and JT analyzed the data. JG-G, RW, FP, FC, and LME wrote the paper with input from all authors. COMPETING INTERESTS Authors declare that they have no competing interests .CC-BY-NC-ND 4.0 International licenseperpetuity. It is made available under a preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in The copyright holder for thisthis version posted November 27, 2025. ; https://doi.org/10.1101/2025.11.25.689431doi: bioRxiv preprint

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