Results
129
Panx1a is broadly expressed in the larval zebrafish brain and is required for visual 130
habituation. 131
We first characterized the spatial distribution of panx1a transcript in 6-dpf WT zebrafish larvae 132
using Hybridization Chain Reaction RNA fluorescence in situ hybridization (HCR RNA-FISH). 133
Panx1a mRNA was widely expressed throughout the brain, with prominent signal in the optic 134
tectum (TeO), telencephalon, and hindbrain (Fig. 1A–C). Quantification of fluorescence 135
intensity across annotated brain regions revealed region-specific differences in expression, 136
including a rostro–caudal gradient along the anterior–posterior axis (Fig. 1B, C). Panx1a signal 137
was observed in proximity to postsynaptic density (PSD) markers, indicating localization within 138
synaptic regions (Fig. 1D, top panel). In addition, panx1a transcript expression was distributed 139
across regions corresponding to both glutamatergic (slc-defined) and GABAergic (gad-defined) 140
domains in the MapZebrain atlas, suggesting broad positioning across excitatory and inhibitory 141
systems (Fig 1D, bottom panel). 142
To assess whether loss of Panx1a loss alters brain size, we performed DAPI-based morphometric 143
analysis in WT and panx1a-/- larvae at 6-dpf. Panx1a-deficient larvae exhibited selective 144
reductions in forebrain width (WT: 183.2 µm; panx1a-/- : 161.1 µm; p < 0.0001) and optic tectum 145
dimensions, including decreased length (WT: 416.4 µm; panx1a-/-: 386.8 µm; p = 0.0023) and 146
width (WT: 198.5 µm; panx1a-/-: 178.5 µm; p = 0.0097) (Fig. 1E, F; Supplementary Table 1). 147
In contrast, hindbrain measurements were unchanged, indicating that Panx1a loss results in 148
region-specific anatomical alterations rather than global developmental defects. 149
.CC-BY-NC-ND 4.0 International licenseavailable under a
(which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made
The copyright holder for this preprintthis version posted April 23, 2026. ; https://doi.org/10.64898/2026.04.22.720230doi: bioRxiv preprint
We next examined the functional consequences of Panx1a loss using a light-flash habituation 150
paradigm (Fig. 1G), in which repeated visual stimuli elicit progressively reduced behavioral 151
responses. WT larvae exhibited robust within-session habituation across repeated stimuli, with 152
response probability progressively decreasing over successive stimuli and across training blocks, 153
and remaining suppressed at the 2 h test time point (Fig. 1H–K). At the block level, WT larvae 154
showed a marked reduction in the proportion of responders after the first stimulus across 155
successive blocks, consistent with effective habituation (Fig. 1H). 156
In contrast, panx1a-/- larvae showed impaired habituation, with weaker response attenuation 157
during training and elevated response probability at 2 h (Fig. 1H–K; Supplementary Table 1). 158
This impairment was evident across blocks, where mutants maintained a higher proportion of 159
responders following repeated stimulation (Fig. 1H). Notably, baseline responses to the initial 160
stimulus were comparable between genotypes, indicating intact sensory detection and motor 161
output. 162
To determine whether transcription is required for habituation, we inhibited transcription using 163
Actinomycin D. In WT larvae, transcriptional blockade significantly reduced habituation (Fig. 164
1J, K). In panx1a-/- larvae, Actinomycin D further disrupted habituation relative to their already 165
impaired baseline (Fig. 1J, K; Supplementary Table 1). Given that WT larvae exhibit stable 166
retention at 2 h while mutants already display pronounced deficits, subsequent analyses focused 167
on this time point to probe the molecular and circuit mechanisms underlying Panx1a-dependent 168
plasticity. 169
.CC-BY-NC-ND 4.0 International licenseavailable under a
(which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made
The copyright holder for this preprintthis version posted April 23, 2026. ; https://doi.org/10.64898/2026.04.22.720230doi: bioRxiv preprint
170
Figure 1. panx1a expression, neuroanatomical alterations, and impaired visual habituation in 171 larval zebrafish. (A–C) Whole-brain mapping of panx1a mRNA expression in 6-dpf WT larvae 172 using HCR RNA-FISH. (A) Dorsal view showing widespread expression across major brain regions, 173 including telencephalon, optic tectum (TeO), and hindbrain. (B) Quantification of mean fluorescence 174 intensity across annotated brain regions, grouped by major anatomical divisions, revealing region-175 specific enrichment. (C) Distribution of panx1a expression along the anterior–posterior axis, showing 176 a rostro–caudal gradient. (D) High-resolution confocal images showing panx1a signal (magenta) with 177 neuronal marker co-labeling (green), indicating expression within neuronal populations. Insets 178 highlight regional localization across z-planes. (E–F) Neuroanatomical analysis in WT and panx1a-/- 179
-100
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larvae. (E) Representative DAPI-stained brains with standardized measurement axes. (F) 180 Quantification of regional brain dimensions reveals reduced forebrain width and optic tectum size in 181 panx1a-/- larvae, with no changes in hindbrain measurements. (G) Schematic of the visual habituation 182 paradigm consisting of repeated light stimuli across training blocks followed by retention testing. 183 (H–I) Habituation dynamics across training blocks. Percentage of responding larvae to initial and 184 repeated stimuli (stimulus number shown on the y-axis) shows progressive response reduction in WT 185 and impaired habituation in panx1a-/- larvae. (J) Effect of transcriptional inhibition (Actinomycin D) 186 on habituation dynamics. (K) Quantification of habituation percentage in WT and panx1a-/- after 187 adding ActinomycinD. Data are presented as mean ± SD. Statistical significance was determined 188 using two-way ANOVA with Šídák’s multiple comparisons test and is indicated (*p < 0.05, **p < 189 0.01, ****p < 0.0001; ns, not significant). 190 191 Habituation engages distributed transcriptional programs that require Panx1a. 192 To determine how habituation modulates transcription, we first assessed activity-dependent gene 193 expression using targeted analysis of IEGs. In WT larvae, habituation induced robust expression 194 of IEGs, including fosab, consistent with activation of transcriptional programs following 195 sensory experience (Fig. 2B). In contrast, panx1a-/- larvae showed reduced or altered expression 196 across multiple IEGs, indicating impaired activity-dependent transcriptional responses. 197 We next quantified de novo RNA synthesis using 5-ethynyl uridine (5-EU) incorporation across 198 anatomically defined regions. We focused our analysis on regions that showed robust signal and 199 consistent changes across both transcriptional and activity-dependent readouts (Supplementary 200 Tables 2–3). 201 In WT larvae, habituation was associated with coordinated transcriptional activity across 202 multiple brain regions, including the optic tectum (TeO), cerebellum (Cb), habenula (dHb, vHb), 203 and epithalamus (Ep) (Fig. 2C–E). These regions are associated with sensory processing, 204 integration, and behavioral adaptation. Across these areas, transcriptional responses were largely 205 maintained following training, suggesting stable engagement of distributed brain networks. 206 In contrast, panx1a-/- larvae showed elevated baseline transcription across many of these same 207 regions that was not sustained after habituation. Instead, transcriptional signal decreased 208 following training, notably in optic tectum, cerebellum, epiphysis, dorsal habenula (Fig. 2C–E; 209 Supplementary Table 3). Similar patterns were observed in hindbrain sensorimotor nuclei and 210 tectal neuropil layers, pointing to a broad disruption of activity-dependent transcription. 211 To assess activity-dependent gene expression, we quantified fosab using HCR RNA-FISH. WT 212 larvae showed robust induction of fosab following habituation across forebrain, midbrain, and 213 hindbrain regions, including the optic tectum, habenula, dorsal telencephalon, and epiphysis 214
(Fig. 2F–H; Supplementary Table 4). In contrast, panx1a-/- larvae showed weaker or absent 215 induction, and in some regions, reduced signal after training (e.g., area postrema: 1624.0 → 216 1000.4; superior raphe: 906.1 → 806.1). Regions that showed strong induction in WT, including 217 epiphysis and dorsal telencephalon, displayed only partial responses in mutants. 218 Across regions, the patterns observed with 5-EU and fosab were consistent, indicating a failure 219 to sustain activity-transcription coupling in the absence of a functional Panx1a. Together, these 220 results show that habituation engages coordinated, brain-wide transcriptional responses, and that 221 Panx1a is required to maintain these responses across functionally relevant regions. 222
223
APSRLCAF8LTaCholGlPhGFMNT egintD−MO_s23AF3TNaT rgMNintD−MO_s1PTMT_esD−MO_s1eMBMesintD−MOsD−MO_s1rsD−MO_s23MT_rT eOT eTAF9intD−MO_s4sD−MOPVLPreTpreTh_vvHbPreT_aEmT_rHbdT eldThProdHbPoRsProTLT elvT elRetEmTvTh_aOEAF5vENTOBEp
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SOSMiD−MOiD−MO_s4iD−MO_s23CbSFGSiD−MO_s5MONintD−MO_s4T eOEpPVLtectal_neuropilAF10T eTSFGS/SGCMBMesAF7iD−MO_s1HbvHbdHbintD−MOsD−MO_s4intD−MO_s5SGCintD−MO_s1sD−MO_s5TLintD−MO_s23OBsac/spvSACsD−MOdT elPreT_aAF8AF9PreTsD−MO_s23FMNaT rgMNsD−MO_s1rsD−MO_s1eEmT_rT elMT_rRh
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IEG expressionanalysis
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SOSMiD−MOiD−MO_s4iD−MO_s23CbSFGSiD−MO_s5MONintD−MO_s4T eOEpPVLtectal_neuropilAF10T eTSFGS/SGCMBMesAF7iD−MO_s1HbvHbdHbintD−MOsD−MO_s4intD−MO_s5SGCintD−MO_s1sD−MO_s5TLintD−MO_s23OBsac/spvSACsD−MOdT elPreT_aAF8AF9PreTsD−MO_s23FMNaT rgMNsD−MO_s1rsD−MO_s1eEmT_rT elMT_rRh
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Figure 2. Panx1a-dependent transcriptional responses to visual habituation. (A) 224 Experimental workflow linking behavioral habituation to transcriptional and activity-dependent 225 readouts, including de novo RNA synthesis (5-EU labeling) and fosab expression. Values in red 226 text are non-significant. (B) Heatmap of IEG expression across knockout and trained conditions, 227 highlighting differential regulation following habituation. All fold change values are normalized 228 to naïve WT. (C) Representative whole-brain 5-EU labeling in WT and panx1a-/- larvae under 229 naïve and trained conditions. Scale bar, 100μm (D) Quantification of regional 5-EU signal 230 intensity across anatomically defined brain regions. (E) 3D mapping of transcriptional changes 231 across brain regions, color-coded by training-induced effect size. (F) Whole-brain HCR RNA-232 FISH detection of fosab expression in WT and panx1a-/- larvae under naïve and trained 233 conditions. Scale bar, 100μm. (G) Quantification of fosab signal intensity across brain regions, 234 showing reduced activity-dependent induction in panx1a-/- larvae. (H) 3D reconstruction of 235 fosab-positive signal across brain regions, color-coded by effect strength. Data are presented as 236 mean values (N = 6 larva per group). Statistical details are provided in Supplementary Tables 3-237 4. 238 Panx1a regulates visual habituation through modulation of excitatory and inhibitory 239 signaling. 240 To test whether Panx1a influences circuit excitability during habituation, we pharmacologically 241 manipulated glutamatergic and GABAergic signaling during the visual habituation assay (Fig. 242 3A). Under control conditions, panx1a-/- larvae exhibited impaired habituation relative to WT, as 243 indicated by reduced attenuation of responses across repeated stimuli (Fig. 3B–F; 244 Supplementary Table 1). 245 We systematically probed excitatory and inhibitory signaling to determine whether Panx1a-246 dependent habituation deficits arise from altered synaptic transmission, plasticity, or inhibitory 247 control. We first examined glutamatergic signaling, targeting AMPA receptors to assess fast 248 excitatory transmission and NMDA receptors to probe activity-dependent plasticity. We then 249 manipulated GABAergic signaling to test whether inhibitory control of neural activity 250 contributes to habituation and the observed mutant phenotype. Blockade of AMPA receptors 251 with DNQX reduced overall habituation in WT larvae and diminished genotype-dependent 252 differences (Fig. 3B), indicating that fast glutamatergic transmission contributes to habituation 253 dynamics. Similarly, NMDA receptor antagonism with MK-801 markedly reduced habituation in 254 WT larvae while producing minimal additional effects in panx1a-/- mutants, thereby reducing 255 genotype-dependent differences (Fig. 3C). These results are consistent with a role for NMDAR-256 dependent plasticity in habituation. 257
To further probe NMDA receptor involvement, we enhanced NMDAR function using glycine. 258 Glycine reduced habituation in WT larvae but had limited effects in panx1a-/- mutants, revealing 259 differential sensitivity to NMDAR modulation (Fig. 3D). 260 We next examined inhibitory signaling. Blockade of GABAA receptors with gabazine disrupted 261 habituation in both genotypes and attenuated genotype-dependent differences (Fig. 3E), 262 indicating that inhibitory transmission is required for normal habituation. In contrast, 263 potentiation of GABAA receptors with diazepam did not significantly change habituation in 264 either genotype and did not rescue the deficit observed in panx1a⁻/⁻ larvae (Fig. 3F) suggesting 265 that increasing inhibitory tone alone is insufficient to restore Panx1a-dependent learning deficits. 266 Across manipulations, excitatory and inhibitory perturbations produced complementary effects 267 on habituation. Notably, increasing inhibitory tone alone was insufficient to restore the mutant 268 phenotype, indicating that the observed deficits do not arise from a simple reduction in inhibition 269 but reflect a broader imbalance in circuit dynamics. Similar effects were observed across 270 additional pharmacological manipulations targeting the same pathways (Supplementary Fig. 2), 271 indicating that these results are robust across independent compounds. Together, these findings 272 indicate that Panx1a regulates habituation by modulating circuit-level excitation–inhibition 273 balance. 274
Figure 3. Panx1a-dependent modulation of excitation–inhibition balance during visual 275 habituation. (A) Schematic of pharmacological manipulations during the visual habituation 276 assay targeting glutamatergic and GABAergic signaling pathways. (B) Effects of AMPA 277 receptor blockade (DNQX) on habituation. Left: trial-by-trial response probability across 278 repeated stimuli. Right: quantification of habituation percentage under control and DNQX 279 conditions. (C) Effects of NMDA receptor antagonism (MK-801) on habituation dynamics and 280 overall response attenuation. (D) Effects of NMDA receptor potentiation with glycine on 281 habituation across genotypes. (E) Effects of GABAA receptor inhibition (gabazine) on 282 habituation. (F) Effects of GABAA receptor potentiation (diazepam), showing no rescue of 283 habituation deficits in panx1a-/- larvae. Across panels, line plots represent mean response 284 probability across repeated stimuli, and bar graphs summarize habituation percentage. Data are 285 presented as mean ± SD. Statistical significance was determined using two-way ANOVA with 286 Šídák’s multiple comparisons test and is indicated (*p < 0.05, **p < 0.01, ****p < 0.0001; ns, 287 not significant). 288 289 290 291
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Panx1a regulates experience-dependent oscillatory dynamics and network coordination 292 during habituation. 293 Given the behavioral and transcriptional abnormalities observed in panx1a-/- larvae, we next 294 examined whether network-level activity is altered during habituation. Local field potentials 295 (LFPs) were recorded simultaneously from the antero-dorsolateral pallium (ADL), a higher-order 296 associative region, and the optic tectum (TeO), a primary visual processing center, in 6-dpf WT 297 and panx1a-/- larvae in vivo (Fig. 4A). Representative traces illustrate theta (3-7 Hz) and gamma 298 (30-45 Hz) activity across conditions (Fig. 4B). 299 Theta-band power did not show consistent training-dependent changes across genotypes or 300 regions (Fig. 4C, D), indicating that low-frequency activity is largely preserved. In contrast, 301 gamma-band activity was selectively modulated by experience. WT larvae exhibited training-302 dependent reductions in gamma power, particularly in the ADL, whereas panx1a-/- larvae 303 showed blunted modulation in both ADL and TeO (Fig. 4E, F), indicating impaired regulation of 304 higher-frequency oscillations. 305 We next assessed theta-gamma phase-amplitude coupling (PAC), a measure of cross-frequency 306 coordination. In WT larvae, habituation decreased PAC in the ADL, as reflected in both 307 comodulograms and quantification (Fig. 4G, H). This decrease was absent in panx1a-/- larvae. In 308 the TeO, PAC was significantly increased by training across genotypes (Fig. 4I, J), indicating 309 region-specific effects. 310 Finally, we examined inter-regional coherence as the TeO and ADL are part of the ascending 311 visual pathway (Fig. 4K). WT larvae showed increased coherence in the theta-band following 312 habituation, whereas panx1a-/- larvae exhibited reduced or disrupted coherence compared with 313 trained WT (Fig. 4L). In contrast, coherence in the gamma-band remained largely unaffected by 314 training across conditions (Fig. 4M), suggesting that Panx1a preferentially supports network 315 coordination in slower-wave coherence. Collectively, these results show that Panx1a is required 316 for experience-dependent modulation of gamma activity, cross-frequency coupling, and network 317 coherence. Rather than reflecting a global loss of oscillatory activity, Panx1a deficiency 318 selectively disrupts higher-frequency and integrative network dynamics that support learning. 319
Figure 4. Panx1a regulates oscillatory dynamics and cross-frequency coupling during visual 320 habituation. (A–B) Electrophysiology overview. (A) Schematic of the electrophysiology setup 321 indicating dual electrode placement for recording brain activity in vivo. (B) Representative traces 322 showing theta-band activity (sensory encoding) and gamma-band activity (memory processing). 323 (C–F) Region-specific oscillatory power changes. (C–D) Theta power in the ADL and TeO in WT 324 and panx1a-/- larvae under naïve and trained conditions. Training modestly increased the theta-band 325 power of WT larvae. (E–F) Gamma power in ADL and TeO. WT larvae show decreased gamma 326 power following habituation, whereas panx1a-/- larvae exhibit increased gamma responses across 327
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both brain regions. (G–J) Theta-gamma PAC. (G, I) Comodulograms illustrating PAC strength 328 across frequency pairs in ADL and TeO for naïve and trained conditions. WT larvae show enhanced 329 PAC following training, especially in the TeO. (H, J) Quantification of theta-gamma PAC strength 330 confirms training-induced decreases in the ADL of WT larvae, while significant training-induced 331 increases in WT that are diminished in panx1a-/- larvae are observed in the TeO. (K–M) Coherence 332 analysis. (K) Schematic illustrating dual-site LFP recording schematic illustrating inter-regional 333 coherence between ADL and TeO. Electrodes (#1, #2) capture local activity (concentric rings), 334 while synchronized oscillations (dashed lines) indicate functional coupling across regions. (L–M) 335 Coherence measurements between the ADL and TeO show frequency-specific alterations following 336 habituation. WT larvae exhibit increased theta-band coherence after training, whereas panx1a-/- 337 larvae show reduced or disrupted coherence compared to the WT; no significant changes are 338 observed in the gamma-band. Data are presented as individual data points with mean ± SD. Number 339 of animals: WT, WT Trained, panx1a-/- trained N = 8; panx1a-/- N = 9. Outliers were removed using 340 the ROUT test (Q = 1%). Data were analyzed using Welch’s t-test (PSD and coherence) and a two-341 way ANOVA with Tukey’s multiple comparisons test (PAC). Statistical significance is indicated as 342 *p < 0.05, **p < 0.01, ***p<0.001, ****p < 0.0001, ns, not significant. 343 344 Experience-dependent modulation of sharp wave-ripple dynamics in the zebrafish pallium 345 requires Panx1a 346 To determine whether experience-dependent plasticity extends to transient network events, we 347 analyzed sharp wave-ripple (SWR)-like complexes recorded from the dorsolateral pallium 348 (ADL) of 6-dpf larvae in vivo (Fig. 5A, B). These events consisted of a large-amplitude sharp-349 wave (SW) deflection temporally coupled to a brief burst of high-frequency ripple activity, 350 consistent with canonical SWR signatures. Time-frequency analysis aligned to ripple peaks 351 confirmed a transient increase in ripple-band power, supporting the identification of these events 352 as SWR-like complexes. 353 Visual habituation was associated with a selective modification of SW structure in the ADL of 354 WT larvae. Specifically, the SW duration was reduced following training, indicating experience-355 dependent refinement of sharp-wave temporal dynamics (Fig. 5C). In contrast, this shortening 356 was attenuated in panx1a-/- larvae, in which SW waveforms exhibited increased variability and 357 lacked consistent training-induced modulation. These observations were confirmed using a two-358 factor linear model, which revealed a significant effect of training on SW duration in WT 359 animals (P<0.01), but not in Panx1a⁻/⁻ mutants, resulting in a genotype-dependent divergence 360 after training. 361
In contrast to these changes in sharp-wave structure, other SWR features were largely preserved 362 (Fig. 5D-F). The total number of SW events did not differ significantly across genotype or 363 training conditions, nor did ripple duration or total ripple count. These results indicate that the 364 generation and frequency of SWR-like events remain intact in the absence of Panx1a, whereas 365 the temporal structure of the sharp-wave component is selectively sensitive to experience. 366 Together, these findings show that SWR-like activity is present in the developing zebrafish 367 pallium and is modulated by sensory experience. Panx1a is not required for the occurrence of 368 these events per se but is necessary for their experience-dependent temporal refinement, 369 suggesting a role in shaping network-level dynamics associated with early forms of learning. 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385
386
Figure 5. Panx1a regulates experience-dependent SWR duration in the dorsolateral pallium. 387 (A) Representative SWR-like complex recorded in vivo from the ADL of 6-dpf larvae. The LFP 388 shows a large-amplitude SW coincident with a transient high-frequency ripple (R) burst. Time-389 frequency spectrogram aligned to ripple peak (dashed line) confirms a temporally restricted increase 390 in ripple-band power. (B) Representative SW waveforms for WT and panx1a⁻/⁻ larvae under naïve 391 and trained conditions (gray, individual events; black, mean), illustrating experience-dependent 392 shortening in WT and increased variability in mutants. (C–F) Quantification of SWR features 393 (points represent individual larvae; mean ± SD). (C) SW duration is reduced following training in 394 WT larvae; an effect attenuated in panx1a-/-. (D) Total number of SW events shows no significant 395 training or genotype effect under mixed-model analysis. (E) Ripple duration is not significantly 396 altered across conditions. (F) Total ripple count remains unchanged across genotype and training. 397 Outliers were removed using the ROUT test (Q = 1%). Statistical comparisons were performed 398 using a two-factor linear model testing the effects of genotype, treatment, and their interaction, with 399 Tukey-adjusted post hoc comparisons of estimated marginal means. Number of animals: WT naïve 400 N = 18; WT Trained N = 14; panx1a-/- naïve N = 16; panx1a-/- trained N = 13. Significance is 401 indicated as **P < 0.01, ns, not significant. 402
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panx1a-/-–Trained
Representative SWR complexes
403 Discussion 404 Pannexin 1 channels have been implicated in synaptic signaling, circuit development, and 405 purinergic communication in the central nervous system. Through ATP release and downstream 406 receptor activation, Panx1 is positioned to influence both neuronal excitability and activity-407 dependent plasticity. However, how these functions contribute to learning-related processes 408 across behavioral, molecular, and network levels remains incompletely understood. Here, we 409 identify Panx1a as a regulator of experience-dependent plasticity in larval zebrafish, linking 410 habituation behavior to coordinated transcriptional and circuit-level dynamics. 411 412 Panx1a loss selectively disrupts experience-dependent plasticity 413 Panx1a is broadly expressed across the larval zebrafish brain, with enrichment in sensory and 414 integrative regions such as the optic tectum (TeO) and telencephalon. In mammals, PANX1 has 415 been shown to regulate neural progenitor proliferation and differentiation through ATP-mediated 416 purinergic signaling, suggesting that its loss can produce region-specific developmental and 417 circuit-level effects rather than global disruption (Wicki-Stordeur & Swayne, 2013). Consistent 418 with this, panx1a⁻/⁻ larvae exhibit selective reductions in forebrain and tectal dimensions, 419 pointing to localized vulnerability in circuits that process and integrate sensory information. 420 The reduction in tectal structure is notable given that our HCR RNA-FISH data place panx1a 421 transcript near a synaptic marker. Previous work has localized Panx1 protein to postsynaptic 422 compartments and demonstrated its association with PSD-95 in mammalian neurons (G. Zoidl et 423 al., 2007), supporting a role in synaptic signaling. In this context, Panx1a-mediated ATP release 424 may contribute to the stabilization or modulation of active synapses, particularly in circuits that 425 undergo repeated sensory engagement. Its absence may therefore compromise the structural or 426 functional integrity of high-demand networks, contributing to the regional anatomical differences 427 observed in mutants. 428 At the behavioral level, panx1a⁻/⁻ larvae display a selective impairment in habituation despite 429 preserved baseline locomotor capacity (Figure. 1I, Supp. Figure. S1). In a no-stimulus condition, 430 mutants exhibit activity levels comparable to WT, indicating that the observed phenotype is 431 unlikely to arise from gross motor deficits. While mutants show some response decrement during 432
initial stimulation, they fail to maintain suppression at the 2-hour test point. This pattern is 433 consistent with a disruption in the stabilization or consolidation of habituation rather than in 434 sensory detection or motor output. 435 Interestingly, independent observations from our lab indicate that panx1a⁻/⁻ larvae exhibit 436 reduced and intermittent locomotor activity during the dark phase, characterized by bouts of 437 slow- and medium-speed swimming (Safarian et al., 2020). Together, these findings suggest that 438 Panx1a does not regulate baseline locomotion per se but may instead contribute to the context-439 dependent modulation of behavioral state. In this framework, the habituation deficit reflects a 440 failure to appropriately adjust behavior in response to repeated sensory input, rather than an 441 inability to generate or sustain movement. In zebrafish and other systems, long-term habituation 442 depends on spaced training and requires new gene expression and protein synthesis (Esdin et al., 443 2010; Ezzeddine & Glanzman, 2003; Rankin et al., 2009; Roberts et al., 2016). Supporting this, 444 transcriptional blockade in WT larvae phenocopies aspects of the panx1a⁻/⁻ deficit, suggesting 445 that Panx1a contributes to processes that sustain experience-dependent behavioral change. 446 447 Purinergic signaling and inhibitory regulation during habituation 448 One mechanism that may underlie the failure to maintain habituation is impaired purinergic 449 feedback. Panx1 channels are a major pathway for ATP release, and extracellular ATP can be 450 converted to adenosine, which generally suppresses neuronal excitability through adenosine 451 receptor signaling (Burnstock et al., 2010; Dahl, 2015). During repeated stimulation, such 452 signaling may contribute to activity-dependent dampening of circuit output. In the absence of 453 Panx1a, this feedback loop may be weakened, allowing circuits to recover responsiveness more 454 rapidly and preventing stable suppression. This interpretation is consistent with broader 455 principles of homeostatic plasticity, in which neural circuits adjust excitability to maintain stable 456 function (Pozo & Goda, 2010; Turrigiano, 2008). In panx1a⁻/⁻ larvae, the failure to sustain 457 response suppression may reflect a disruption in excitation–inhibition balance. Panx1 regulates 458 GABAergic transmission, and its loss reduces inhibitory efficacy while shifting circuits toward 459 excitation (García-Rojas et al., 2023), a change that could impair activity-dependent dampening 460 during repeated stimulation. 461 462 463
Disruption of activity-dependent transcriptional programs 464 At the molecular level, Panx1a loss disrupts activity-dependent transcriptional responses, 465 effectively decoupling sensory experience from sustained gene expression changes. In WT 466 larvae, habituation is associated with coordinated increases in de novo RNA synthesis and 467 immediate early gene (IEG) expression across multiple brain regions. In contrast, panx1a⁻/⁻ 468 larvae show a blunted and less organized transcriptional response following training. 469 Activity-dependent transcription in neurons is typically driven by calcium-dependent signaling 470 pathways that link synaptic activity to transcription factor activation and IEG induction (Greer & 471 Greenberg, 2008; Lyons & West, 2011). Panx1-mediated ATP release has been shown to 472 influence intracellular calcium dynamics through purinergic receptor activation (Dahl, 2015; 473 Locovei et al., 2006; Swayne & Boyce, 2017), suggesting a potential mechanism by which 474 Panx1a could contribute to activity-transcription coupling. Through this pathway, Panx1-475 mediated signaling has the potential to influence calcium-dependent transcriptional responses. In 476 this framework, Panx1a may contribute to activity–transcription coupling by facilitating the 477 translation of synaptic activity into sustained gene expression programs. Interestingly, panx1a⁻/⁻ 478 larvae exhibit elevated baseline transcription in several regions. This may reflect compensatory 479 circuit regulation, as neural systems are known to adjust baseline excitability in response to 480 perturbations to maintain functional stability (Pozo & Goda, 2010; Turrigiano, 2008). An 481 elevated baseline state could reduce the dynamic range available for further activity-dependent 482 induction, effectively imposing a ceiling on transcriptional responses. Activity-dependent gene 483 expression is known to depend on stimulus intensity and intracellular signaling thresholds (Greer 484 & Greenberg, 2008; Tyssowski et al., 2018), suggesting that elevated baseline activity may 485 constrain the ability of circuits to mount coordinated transcriptional responses during 486 habituation. 487 Panx1a and excitation–inhibition balance 488 Our pharmacological data further suggest that Panx1a contributes to the regulation of excitation–489 inhibition (E/I) balance during habituation. NMDA receptor antagonism reduces habituation in 490 WT larvae but produces minimal additional effects in panx1a⁻/⁻ mutants, consistent with partial 491 convergence between Panx1a-dependent signaling and NMDAR-linked plasticity mechanisms. 492 Panx1 and NMDAR signaling are functionally coupled in mammalian neurons, with NMDAR-493
mediated calcium influx triggering Panx1 channel activation and Panx1-dependent ATP release 494 further modulating excitability and synaptic signaling (Li et al., 2018; Rangel-Sandoval et al., 495 2024b; Weilinger et al., 2016). In this framework, loss of Panx1 disrupts this feedback loop, 496 which may alter NMDAR-dependent activity and impair the regulation of circuit excitability. 497 Perturbation of GABAergic signaling strongly affects habituation, yet enhancement of GABAA 498 receptor function does not rescue the mutant phenotype. This argues against a simple reduction 499 in inhibitory tone and instead suggests a defect in the activity-dependent recruitment or 500 regulation of inhibition during repeated stimulation. This interpretation is consistent with 501 evidence that visual habituation in larval zebrafish is sensitive to GABAA/GABAC receptor 502 blockade, indicating that inhibitory signaling contributes to habituation learning, and with 503 broader work showing that habituation and experience-dependent sensory filtering can arise from 504 plastic changes in inhibitory circuits rather than static inhibition alone (Das et al., 2011; Kato et 505 al., 2015; Lamiré et al., 2023). Panx1 is also implicated in the regulation of inhibitory synaptic 506 transmission and excitation–inhibition balance in hippocampal circuits, where disruption of 507 Panx1 signaling alters GABAergic transmission and network excitability (Ardiles et al., 2014; 508 Flores-Muñoz et al., 2022; Illanes-González et al., 2025), providing a potential mechanism for 509 the impaired stabilization of habituation observed in panx1a⁻/⁻ larvae. 510 Network-level coordination across oscillations and transient events 511 At the network level, experience-dependent plasticity is reflected in coordinated changes across 512 oscillatory activity and transient population events. In wild-type larvae, habituation was 513 associated with a reduction in gamma-band power in the ADL, a region functionally analogous 514 to the mammalian hippocampus. Gamma oscillations arise from interactions between excitatory 515 neurons and interneurons and are widely interpreted as a marker of local circuit synchronization 516 (Colgin, 2016). The observed reduction in gamma activity is therefore consistent with a 517 reorganization of local network dynamics following repeated stimulation. The absence of 518 comparable modulation in panx1a⁻/⁻ larvae indicate impaired adjustment of these coordinated 519 activity patterns. 520 Changes were also evident at the level of cross-frequency interactions. In wild-type larvae, 521 habituation reduced theta–gamma phase–amplitude coupling (PAC) in the ADL, consistent with 522
a shift in network state. PAC reflects structured interactions between low-frequency phase and 523 high-frequency amplitude and is thought to support the coordination of neural activity across 524 temporal and spatial scales (Soulat et al., 2022). Recent work demonstrates that hippocampal 525 theta–gamma PAC coordinates interactions between frontal and medial temporal lobe circuits 526 and tracks working memory demand and behavioral performance (Daume et al., 2024). In this 527 context, the reduction in PAC observed here is consistent with a transition from a highly 528 coordinated, novelty-responsive state toward a more stable processing regime. This adaptation 529 was absent in panx1a⁻/⁻ larvae, suggesting reduced flexibility in experience-dependent network 530 reconfiguration. 531 At the inter-regional level, coherence between the optic tectum and ADL increased in the theta 532 band following habituation in wild-type larvae but was disrupted in mutants. This indicates that 533 Panx1a contributes not only to local circuit dynamics but also to coordination across regions 534 within the visual processing pathway. Together with the PAC findings, these results point to a 535 role for Panx1a in supporting to organize activity across multiple temporal and spatial scales. 536 Experience-dependent effects were also evident in transient network events. SWR-like 537 complexes were present in the developing pallium in vivo and exhibited selective modulation 538 following habituation. Specifically, the duration of the SW component was reduced in wild-type 539 larvae, whereas ripple-associated features, including duration and event frequency, remained 540 unchanged. This dissociation indicates that experience-dependent plasticity preferentially affects 541 the low-frequency component of these events at this developmental stage. In panx1a⁻/⁻ larvae, 542 this refinement of SW duration was attenuated, while overall event occurrence and ripple 543 properties were preserved. These findings indicate that Panx1a is not required for the generation 544 of SWR-like events but contributes to their temporal structuring. 545 Altogether, these observations suggest that experience-dependent plasticity in the developing 546 brain operates through coordinated adjustments of both ongoing oscillatory activity and transient 547 population events. Across measures, Panx1a loss is associated with reduced modulation of 548 gamma activity, impaired PAC adaptation, disrupted inter-regional coherence, and diminished 549 refinement of sharp-wave dynamics. Rather than reflecting a global disruption of activity, this 550
pattern is consistent with a reduced capacity to reorganize network dynamics in response to 551 experience. 552 A unifying framework across scales 553 Taken together, our findings support a model in which Panx1a functions as a mediator of 554 activity-dependent signaling across multiple levels of organization. Through ATP release and 555 purinergic signaling, Panx1a may couple neural activity to intracellular pathways that regulate 556 transcription, synaptic plasticity, and network coordination. Loss of Panx1a disrupts this 557 coupling, leading to deficits that manifest at the behavioral, molecular, and electrophysiological 558 levels. Rather than acting within a single pathway, Panx1a appears to shape how neural activity 559 is translated into stable adaptations. In this framework, the impaired habituation observed in 560 panx1a⁻/⁻ larvae reflects a broader failure to stabilize experience-dependent changes over time. 561 562 Energy and efficiency in habituation 563 Although we did not directly measure metabolic activity, the dual role of Panx1 in ATP release 564 and purinergic signaling raises the possibility that it contributes to coupling neural activity with 565 energetic regulation (G. S. O. Zoidl et al., 2025). Habituation has been proposed to reflect an 566 optimization process in which neural responses are reduced as stimuli become predictable, 567 balancing information processing with energetic cost. Our results are consistent with this 568 framework, suggesting that Panx1a may participate in signaling pathways that constrain circuit 569 activity during repeated stimulation, although direct tests of this hypothesis will be required. 570 571 Limitations and future directions 572 General limitations should be considered. Transcriptional and co-activation measures remain 573 correlational and do not establish causal relationships between brain regions or processes. 574 Pharmacological manipulations may have indirect effects on circuit excitability, and 575 developmental compensation in panx1a⁻/⁻ larvae cannot be excluded. Additionally, the temporal 576 dynamics of transcriptional responses may differ between genotypes, and our sampling window 577 may not capture all relevant changes. Despite these limitations, the convergence of behavioral, 578 molecular, pharmacological, and electrophysiological findings supports a model in which Panx1a 579 is a key regulator of experience-dependent plasticity. By facilitating the coupling of neural 580
activity to transcriptional and network-level responses, Panx1a contributes to the brain’s ability 581 to filter repetitive stimuli and adapt to a changing sensory environment. 582 583 584
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