Benchmarking BarraCUDA on Epigenetic DNA and nVidia Pascal GPUs

2016 · doi:10.1101/095075
preprint OA: closed CC-BY-NC-ND-4.0
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Abstract

Typically BarraCUDA uses CUDA graphics cards to map DNA reads to the human genome. Previously its software source code was genetically miproved for short paired end next generation sequences. On longer, 150 base paired end noisy Cambridge Epigsnetix’s data, a Pascal GTX 1080 proc esses about 10000 strings per second, comparable with twin nVidia Tesla K40.

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europepmc
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License: CC-BY-NC-ND-4.0