Plastome Structure and Phylogenetic Relationships of Styracaceae (Ericales)

Abstract Background: The Styracaceae are a woody, dicotyledonous family containing 12 genera and an estimated 160 species. Recent studies have shown that Styrax and Sinojackia are monophyletic, Alniphyllum and Bruinsmia cluster into a clade with an approximately 20-kb inversion in the Large Single-Copy (LSC) region. Halesia and Pterostyrax are not supported as monophyletic, while Melliodendron and Changiostyrax always form sister clades . Perkinsiodendron and Changiostyrax were newly established genera of Styracaceae. However, the phylogenetic relationship of Styracaceae at the genera level needs further research.Results: We collected 28 complete plastomes of Styracaceae, including 12 sequences newly reported here and 16 publicly available complete plastome sequences, comprising 11 of the 12 genera of Styracaceae. All species possessed the typical quadripartite structure of angiosperm plastomes, and the sequence difference is small, except for the large 20-kb (14 genes) inversion region found in Alniphyllum and Bruinsmia. Seven coding sequences (rps4, rpl23, accD, rpoC1, psaA, rpoA and ndhH) were identified to possess positively selected sites. Phylogenetic reconstructions based on seven data sets (i.e., LSC, SSC, IR, Coding, Non-coding, combination of LSC+SSC and concatenation of LSC+SSC+one IR) produced similar topologies. In our analyses, all genera were strongly supported as monophyletic. Styrax was sister to the remaining genera. Alniphyllum and Bruinsmia form a clade. Halesia diptera does not cluster with Perkinsiodendron, while Perkinsiodendron and Rehderodendron form a clade. Changiostyrax is sister to a clade of Pterostyrax and Sinojackia,Conclusion: Our results clearly indicate that Pterostyrax is monophyletic, and the establishment of Perkinsiodendron and Changiostyrax are supported. A 20-kb reverse sequence was also found in the newly published sequence of Alniphyllum fortunei, which confirmed the existence of large inversion sequence in Alniphyllum and Bruinsmia.