Methods
72
Study area 73
Bukit Maras is situated in the Kuala Nerus district, Terengganu, surrounded by human settlement 74
and agricultural areas (Fig. 1). It has a total of approximately 2200 hectares of land comprised of 75
agricultural areas, secondary forest, and primary forest (underexplored). 76
There are three main sampling sites: 77
• Site 1 (5°25'20.98"N 103°1'18.18"E) – This hill has a large soil road from the foothill to 78
the summit as a hiking trekking trail. The landscape is characterized by an agricultural 79
matrix and an open area for car parking at the foothill. Crop plantation areas also can be 80
found along the trekking trails up to 200 meters. Examples of the planted crops are durian 81
trees (Durio spp.), petai trees (Parkia speciosa), and banana plants (Musa spp.). Two 82
disturbed small streams can be found in the agricultural areas, which originated from the 83
intact secondary and primary forest. 84
• Site 2 (5°24'33.77"N 103°1'27.63"E) – This hill also has a large soil road from the 85
foothill to the summit as a hiking trekking trail. Oil palm and rubber plantations are the 86
primary agricultural plantations here. Secondary forest vegetation situated mainly at the 87
peak. A disturbed small stream flow through the agricultural area. 88
• Site 3 (5°24'35.4"N 103°00'47.4"E) – This site is a secondary forest characterized by a 89
small stream covered by a few dipterocarp tree species left undisturbed from 90
deforestation in the previous years. This site has the minimal disturbance compared to 91
other two sites but the threat of deforestation for orchard expansion is imminent. 92
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93
Figure 1. A. Location of Bukit Maras in Terengganu, Peninsular Malaysia. B–C. QGIS 94
generated map showing the area of BM surrounded by the agricultural, rural, and urban areas. 95
Sample collection and preservation 96
The surveys were conducted opportunistically from July 2019–October 2019, 4 July 2020, 12 97
July 2020, 26–27 July 2020, 17 October 2020, 12–14 November 2020, 1 November 2020, 26 98
November 2020, 28 November 2020,15 January 2021 and between 31 December 2022 to 11 99
March 2023. Initially, pilot surveys were done opportunistically in 2019, and a systematic survey 100
was in the planning for the subsequent years but due to the Covid 19 situation during the former 101
years (2020–2021), opportunistic surveys approach was implemented at this site to standardize 102
the sampling effort. Surveyed areas spanned the disturbed and undisturbed small streams, 103
secondary forests, and agricultural areas. The primary forest was remained untapped due to its 104
inaccessibility. We sampled 13 sampling points grouped into four categories: agricultural area 105
(AA); secondary forest (SF); agricultural area stream (STA); secondary forest stream (STF) 106
(Table 1). We divided the habitat types into these four categories as we expect these four habitat 107
types will consist of different species composition and demonstrate the importance of each 108
habitat for this species. 109
South
China
Sea
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Table 1. Habitat categories studied in Bukit Maras 110
Habitat Characteristics Sampling
Site
Sampling
Point
Agricultural
area
Mainly composed of durian (Durio sp.), banana
(Musa sp.), petai (Parkia speciosa), oil palm (Elaeis
guineensis) and rubber (Hevea brasiliensis)
plantation. Scatterly located from the foothill up to
elevation of 200 metres a.s.l.
Site 1,
Site 2
4
Secondary
forest
Forest remnants composed mainly of native species,
unmanaged environment, with formation of
understory and canopy.
All sites 4
Agricultural
area stream
Small stream in the agricultural area with no canopy
formation
Site 1,
Site 2
3
Secondary
forest stream
Small stream in the agricultural area with canopy
formation
Site 1,
Site 3
2
111
A
B
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C
D
E
F
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Figure 2. Habitat types in Bukit Maras A–D. agricultural area E. secondary forest F. stream at 112
secondary forest G–H. stream at agricultural area. 113
To maximize the sampling effort, three types of collecting methods were employed: Visual 114
Encounter Survey (VES), drift-fenced pitfall traps, and acoustic sampling. The samplings were 115
executed during the day (10:00 to 13:00 h) and at night (20:00 to 23:00 h) to record both diurnal 116
and nocturnal species. The VES activities were conducted with search parties consisting of three 117
to four persons. This method was executed during the day and night to sample diurnal and 118
nocturnal species in the area. A set of pitfall traps consisted of three 18L buckets and aluminum 119
zinc as the fence. The buckets were buried two meters apart from each other and were arranged 120
in approximately straight lines. Two sets of pitfall traps were set up randomly at different 121
locations. The first one was deployed at the foothill near the agricultural area, and the second set 122
was deployed at the hilly area in the secondary forest. The vocalization method also was used to 123
record the species based on the frog calls. The recorded sound can be used for species-specific 124
sound characteristic description in future study (Chan et al., 2020; Quah et al., 2021). A total of 125
816 man-hours (204 hours/person) were spent for the herpetofauna surveys. 126
Captured specimens were identified based on their morphological characteristic, following Berry 127
(1975) for amphibians, Grismer (2011) for lizards, Auliya (2007) for freshwater turtles and 128
tortoises, and Das (2012) for snakes. Photographs of live specimens were taken with the Canon 129
3000D and Sony A6000 digital cameras. Amphibian nomenclature follows the Amphibian 130
Species of the World database (Frost 2024), while the reptile nomenclature follows The Reptile 131
Database (Uetz et al. 2023). Only a few samples were taken for voucher specimens to minimize 132
G
H
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the extirpation of the current population. Euthanized voucher specimens were then preserved 133
with 10% formalin before being transferred into 70% ethanol for long-term storage and 134
deposited at the General Biology Lab, Universiti Malaysia Terengganu, and catalogued under 135
UMT Zoological Collection (UMTZC). 136
Data analysis 137
The individual-based and coverage-based rarefaction and extrapolation analysis was constructed 138
by using the “iNEXT” R package (Hsieh et al. 2016) to determine the adequacy of our sampling 139
effort at BM and for both amphibian and reptile groups. The sampling achieves completeness 140
when the curve is plateauing for the former and achieve completeness value which is 1.0 for the 141
latter. This analysis permits comparison of diversity with Hill numbers of order q for unequal 142
sampling effort between two or more sites or groups. There are three types of order q for Hill 143
numbers namely, species richness (q=0), Shannon’s diversity (q=1) and Simpson’s diversity 144
(q=3). We only utilized diversity order of species richness (q=0) for this study. We also used this 145
analysis to compare the herpetofauna diversity between the four habitat types. For the 146
comparison of habitat types, we combined both amphibians and reptiles data as herpetofauna 147
data to utilize in the comparison analysis. Non-overlap curves strongly indicate significant 148
difference and vice versa for both individual-based and coverage-based rarefaction and 149
extrapolation curves. 150
For species-habitat network, we built two networks using both abundance and incidence data 151
acting as links while habitat types and herpetofauna species acting as nodes (Marini et al. 2019). 152
The analysis was performed using the “bipartite” R package (Dormann et al. 2009). All analyses 153
were executed in RStudio software (RStudio Team 2023). 154
Results
155
A total of 55 herpetofauna species from six amphibian families (Bufonidae – 2 spp., 156
Dicroglossidae – 5 spp., Megophryidae – 3 spp., Microhylidae – 4 spp., Ranidae – 5 spp., 157
Rhacophoridae – 4 spp.) and nine reptile families (Agamidae – 7 spp., Gekkonidae – 7 spp., 158
Scincidae – 4 spp., Varanidae – 1 spp., Colubridae – 9 spp., Pythonidae – 1 spp., Viperidae – 1 159
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spp., Trionychidae – 1 spp., Testudinidae – 1 spp.) were recorded in this study (Table 2). Based 160
on IUCN Redlist (2024), there is only single species (Manouria emys) listed under "Critically 161
Endangered" status in this study, whereas the rest of the species are categorized as "Least 162
Concern". 163
Table 2. A species checklist of amphibians and reptiles recorded in Bukit Maras and their IUCN 164
status. 165
No Taxa IUCN
AMPHIBIANS
Bufonidae
1 Duttaphrynus melanostictus (Schneider, 1799) LC
2 Ingerophrynus parvus (Boulenger, 1887) LC
Dicroglossidae
3 Fejervarya limnocharis (Gravenhorst, 1829) LC
4 Limnonectes blythii (Boulenger, 1920) LC
5 Limnonectes deinodon Dehling, 2014 LC
6 Limnonectes hascheanus (Stoliczka, 1870) LC
7 Limnonectes malesianus (Kiew, 1984) LC
Megophryidae
8 Leptobrachella sola (Matsui, 2006) LC
9 Leptobrachium hendricksoni Taylor, 1962 LC
10 Pelobatrachus nasuta (Schlegel, 1858) LC
Microhylidae
11 Kaloula pulchra Gray, 1831 LC
12 Microhyla berdmorei (Blyth, 1856) LC
13 Microhyla heymonsi Vogt, 1911 LC
14 Microhyla mantheyi Das, Yaakob & Sukumaran, 2007 LC
Ranidae
15 Humerana miopus (Boulenger, 1918) LC
16 Hylarana glandulosa (Boulenger, 1882) LC
17 Hylarana labialis (Boulenger, 1887) LC
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18 Hylarana laterimaculata (Barbour & Noble, 1916) LC
19 Hylarana nicobariensis (Stoliczka, 1870) LC
Rhacophoridae
20 Nyctixalus pictus (Peters, 1871) LC
21 Polypedates discantus Rujirawan, Stuart & Aowphol, 2013 LC
22 Polypedates leucomystax (Gravenhorst, 1829) LC
23 Theloderma licin McLeod & Ahmad, 2007 LC
REPTILES
LIZARDS
Agamidae
24 Acanthosaura armata (Gray, 1827) LC
25 Bronchocela cristatella (Kuhl, 1820) LC
26 Calotes versicolor (Daudin, 1802) LC
27 Draco sumatranus Schlegel, 1844 LC
28 Gonocephalus grandis (Gray, 1845) LC
29 Gonocephalus liogaster (Günther, 1872) LC
30 Leiolepis belliana (Hardwicke & Gray, 1827) LC
Gekkonidae
31 Cyrtodactylus consobrinus (Peters, 1871) LC
32 Cyrtodactylus quadrivirgatus Taylor, 1962 LC
33 Gehyra mutilata (Wiegmann, 1834) LC
34 Gekko monarchus (Schlegel, 1836) LC
35 Hemidactylus frenatus Duméril & Bibron, 1836 LC
36 Hemidactylus platyurus (Schneider, 1797) LC
37 Hemiphyllodactylus typus Bleeker, 1860 LC
Scincidae
38 Dasia olivacea Gray, 1839 LC
39 Eutropis multifasciata (Kuhl, 1820) LC
40 Lipinia vittigera (Boulenger, 1894) LC
41 Lygosoma siamensis Siler, Heitz, Davis,
Freitas, Aowphol, Termprayoon & Grismer, 2018
LC
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Varanidae
42 Varanus salvator (Laurenti, 1768) LC
SNAKES
Colubridae
43 Ahaetulla prasina (Boie, 1827) LC
44 Boiga cynodon (Boie, 1827) LC
45 Dendrelaphis caudolineatus (Gray, 1834) LC
46 Dendrelaphis cyanochloris (Wall, 1921) LC
47 Dendrelaphis pictus (Gmelin, 1789) LC
48 Dendrelaphis striatus (Cohn, 1905) LC
49 Gonyosoma oxycephalum (Boie, 1827) LC
50 Lycodon subcinctus Boie, 1827 LC
51 Pseudorhabdion longiceps (Cantor, 1847) LC
Pythonidae
52 Malayopython reticulatus (Schneider, 1801) LC
Viperidae
53 Tropidolaemus wagleri (Boie, 1827) LC
FRESHWATER TURTLE AND TORTOISE
Testudinidae
54 Manouria emys (Schlegel & Müller, 1844) CR
Trionychidae
55 Dogania subplana (Geoffroy Saint-Hilaire, 1809) LC
Notes: IUCN STATUS: LC = Least Concerned; CR = Critically Endangered. 166
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A
C
D
E
F
B
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Figure 3. Amphibians from Bukit Maras A. Duttaphrynus melanostictus B. Ingerophrynus 167
parvus C. Fejevarya limnocharis D. Limnonectes deinodon E. Leptobrachium hendricksonii F. 168
G
H
I
K
L
J
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Megophrys nasuta G. Microhyla heymonsi H. Microhyla mantheyi I. Humerana miopus J. 169
Hylarana labialis K. Polypedates leucomystax L. Theloderma licin 170
A
C
D
E
F
B
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Figure 4. Lizards from Bukit Maras A. Acanthosaura armata B. Bronchocela cristatella C. 171
Calotes versicolor D. Gonocephalus grandis E. Gonocephalus liogaster F. Leiolepis belliana G. 172
Cyrtodactylus consobrinus H. Cyrtodactylus quadrivirvagtus I. Gekko monarchus J. 173
Hemiphyllodactylus typus K. Lygosoma siamensis L. Lipinia vittigera 174
G
H
I
K
L
J
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A
C
D
E
F
B
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Figure 5. Freshwater tortoise and turtle and snakes from Bukit Maras A. Ahaetulla prasina B. 175
Boiga cynodon C. Dendrelaphis caudolineatus D. Dendrelaphis cyanochloris E. Dendrelaphis 176
pictus F. Dendrelaphis striatus G. Gonyosoma oxycephalum H. Lycodon subcinctus I. 177
Malayopython reticulatus J. Tropidolaemus wagleri K. Manouria emys L. Dogania subplana 178
G
H
I
K
L
J
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The individual-based rarefaction and extrapolation curves for the total herpetofauna and each of 179
amphibian and reptilian assemblages implied that additional species can be detected in BM when 180
more sampling efforts are executed as the extrapolated curves for all three showed no sign of 181
plateauing just yet. At the extrapolated curves, it is estimated that 60 herpetofauna species can be 182
discover in BM, which to be specific a potential discovery of an additional two species of 183
amphibians and three species of reptiles with additional efforts. Coverage-based rarefaction and 184
extrapolation curves are in accord with the individual-based rarefaction and extrapolation curves 185
as the curves approaching the sampling completeness value. All curves are non-overlapped 186
which indicated that the species richness (q=0) for all curves are significantly different. 187
188
Figure 6. A. Individual-based rarefaction (solid line segment) and extrapolation (dotted line 189
segment) sampling curves with 95% confidence interval (shaded areas) (left panel) and B. 190
coverage-based rarefaction (solid line segment) and extrapolation (dotted line segment) sampling 191
curves with 95% confidence interval (shaded areas) (right panel) for herpetofauna sampled in 192
Bukit Maras, Terengganu, Peninsular Malaysia. 193
In general, the Calotes versicolor had the highest abundance compared to other species in Bukit 194
Maras. It also contributed the highest number of individuals in agricultural area (AA). The AA is 195
also the site with the highest number of individuals occupied by the herpetofauna. Species 196
richness-wise, the seconday forest (SF) had the highest number of species among the habitats. 197
The Fejevarya limnocharis had the highest number of frequency as it can be found across all 198
four habitats. Each of the habitat type composed of different set of species composition (Fig. 7). 199
In specific, there are 36 species of herpetofauna in SF and the highest number of individuals is 200
Eutropis multifasciata (12 individuals), followed by Microhyla heymonsi (11 individuals) and 201
A
B
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Limnonectes hascheanus (7 individuals). Meanwhile, AA had only 17 species and dominated by 202
C. versicolor (68 individuals), followed by Hemidactylus frenatus (17 individuals) and 203
Duttaphrynus melanostictus (15 individuals). For riparian areas, stream of secondary forest 204
(STF) had 16 species, and dominated by Limnonectes deinodon (36 individuals), followed by 205
Hylarana labialis (25 individuals) and Leptobrachium hendricksoni (16 individuals). On the 206
other hand, stream of agricultural area (STA) had only nine species, dominated by Polypedates 207
leucomystax (23 individuals), followed by Fejevarya limnocharis (19 individuals) and H. labialis 208
(17 individuals). 209
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Figure 7. Species-habitat network in Bukit Maras. A. Abundance-based species-habitat network 210
B. Incidence-based species-habitat network. The left panel represents nodes for habitat types 211
while the right panel represents nodes for each species. The width of the links represents the 212
A
B
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number of individuals (abundance-based) and frequency of occurrence (incidence-based). The 213
nodes are arranged from the highest to lowest (abundance/frequency). 214
The diversity order of species richness (q=0) for both curves for secondary forest (SF) and 215
secondary forest’s stream (STF) are not yet approaching asymptote even at the extrapolated 216
curves indicating that more species can be discovered in both habitats. On the other hand, both 217
curves for agricultural area (AA) and agricultural area’s stream (STA) showed a sign of levelling 218
off at the extrapolated curves indicating that the sampling in these areas are almost complete. 219
220
Figure 8. A. Individual-based rarefaction (solid line segment) and extrapolation (dotted line 221
segment) sampling curves with 95% confidence interval (shaded areas) and B. coverage-based 222
rarefaction (solid line segment) and extrapolation (dotted line segment) sampling curves with 223
95% confidence interval (shaded areas) for the herpetofauna data of four habitat types: green 224
(secondary forest); red (agricultural area). The solid dots/triangles represent the reference 225
samples. Hill numbers of order (q = 0) or species richness was measured for both curves. 226
References
286
Alam MM, Morshed MD, Siwar C, Murad M (2012) Initiatives and challenges of agricultural 287
crop sector in East Coast Economic Region (ECER) development projects in Malaysia. 288
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
25
American-Eurasian Journal of Agricultural & Environmental Sciences 12 (7): 922–289
931. https://ssrn.com/abstract=2942578 290
Auliya M (2007) An identification guide to the tortoises and freshwater turtles of Brunei 291
Darussalam, Indonesia, Malaysia, Papua New Guinea, Philippines, Singapore and Timor Leste. 292
TRAFFIC Southeast Asia, Petaling Jaya, Malaysia, 99 pp. 293
Badli-Sham BH, Shahirah-Ibrahim N, Xian GS, Syamila-Noh H, Shukor NSAA, Shafie FA, 294
Daud NM, Razak FAA, Rosli R, Aziz AAA, Mohammad FNF, Kamaruzzaman MF, Mohamad 295
S, Dzu K, Shariffudin A, Najwa-Sawawi S, Ahmad A (2019) Herpetofauna of Universiti 296
Malaysia Terengganu campus: Sustaining biodiversity in campus green area. Journal of 297
Sustainability Science and Management 14 (1): 11–28. 298
Badli-Sham BH, Syafiq MF, Aziz MSA, Jalil NRM, Awang MT, Othman MNA, Aziz AAA, 299
Dzu K, Wahab NAA, Jamil NL, Ismail MA, Azman WAAW, Wei OX, Jamaha NAN, Aqmal-300
Naser M, Fahmi-Ahmad M, Shahirah-Ibrahim N, Rizal SA, Belabut DM, Chan KO, Quah ESH, 301
Grismer LL, Ahmad AB (2023) A decade of amphibian studies (Animalia, Amphibia) at Sekayu 302
lowland forest, Hulu Terengganu, Peninsular Malaysia. Zookeys 1157: 43–93. 303
Berry PY (1975) The amphibian fauna of Peninsular Malaysia. Tropical Press, Kuala Lumpur, 304
Malaysia, 127 pp. 305
Chan KO, Wood Jr PL, Anuar S, Muin MA, Quah ESH, Sumarli AXY, Grismer LL (2014) A 306
new species of upland Stream Toad of the genus Ansonia Stoliczka, 1870 (Anura: Bufonidae) 307
from northeastern Peninsular Malaysia. Zootaxa 3764 (4): 427–440. 308
https://doi.org/10.11646/zootaxa.3764.4.3 309
Chan KO, Muin MA, Badli-Sham BH, Fatihah-Syafiq M, Abraham RK, Ahmad A, Zakaria R 310
(2020). Identification and species delimitation of the enigmatic Marsh Frog Pulchrana rawa 311
(Matsui, Mumpuni, and Hamidy, 2012): Second confirmed specimen and first country record for 312
Malaysia. Journal of Herpetology 54(3): 282–288. 313
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
26
Chazdon RL, Peres CA, Dent D, Sheil D, Lugo AE, Lamb D, Stork NE, Millers SE (2009) The 314
potential for species conservation in tropical secondary forests. Conservation Biology 23(6): 315
1406–1417. 10.1111/j.1523-1739.2009.01338.x 316
Das I (2012) Naturalist's guide to the snakes of South-East Asia: Malaysia, Singapore, Thailand, 317
Myanmar, Borneo, Sumatra, Java and Bali. John Beaufoy Publishing, Oxford, England, 160 pp. 318
Dormann CF, Fruend J, Bluethgen N, Gruber B (2009) Indices, graphs and null models: 319
analyzing bipartite ecological networks. Open Ecology Journal 2:7–24. 320
http://dx.doi.org/10.2174/1874213000902010007 321
Faruk A, Belabut D, Ahmad N, Knell RJ, Garner TWJ (2013) Effects of oil-palm plantations on 322
diversity of tropical Anurans. Conservation Biology 27: 615–624. 10.1111/cobi.12062 323
Fatihah-Syafiq M, Badli-Sham BS, Fahmi-Ahmad M, Aqmal-Naser M, Rizal SA, Azmi MSA, 324
Grismer LL, Ahmad AB (2020) Checklist of herpetofauna in the severely degraded ecosystem of 325
Bidong Island, Peninsular Malaysia, South China Sea. Zookeys 985: 143–162. 326
10.3897/zookeys.985.54737 327
Frost DR (2024) Amphibian Species of the World. American Museum of Natural History, New 328
York, USA. https://amphibiansoftheworld.amnh.org/. Accessed on: 2024–03–11. 329
Gillespie GR, Ahmad E, Elahan B, Evans A, Ancrenaz M, Goossens B, Scroggie MP (2012) 330
Conservation of amphibians in Borneo: Relative value of secondary tropical forest and non-331
forest habitats. Biological Conservation 152: 136–144. 332
https://doi.org/10.1016/j.biocon.2012.03.023 333
Grismer LL (2011) Lizards of Peninsular Malaysia, Singapore, and their adjacent archipelagos: 334
Their description, distribution, and natural history. Edition Chimaira, Frankfurt am Main, 335
Germany, 728 pp. 336
Grismer LL, Anuar S, Muin MA, Quah ESH, Wood Jr PL (2013a) Phylogenetic relationships 337
and description of a new upland species of Bent-toed Gecko (Cyrtodactylus Gray, 1827) of the 338
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
27
C. sworderi complex from northeastern Peninsular Malaysia. Zootaxa 3613 (3): 239–252. 339
https://doi.org/10.11646/zootaxa.3616.3.2 340
Grismer LL, Wood Jr PL, Anuar S, Muin MA, Quah ESH, McGuire JA, Brown RM, Tri NV, 341
Thai PH (2013b) Integrative taxonomy uncovers high levels of cryptic species diversity in 342
Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) and the description of a new species 343
from Peninsular Malaysia. Zoological Journal of the Linnean Society 169 (4): 849–880. 344
https://doi.org/10.11646/zootaxa.3616.3.2 345
Grismer LL, Wood PL Jr, Chan KO, Anuar S (2014a) Cyrts in the city: A new Bent-toed Gecko 346
(Genus Cyrtodactylus) is the only endemic species of vertebrate from Batu Caves, Selangor, 347
Peninsular Malaysia. Zootaxa 3774(4): 318–394. https://doi.org/10.11646/zootaxa.3774.4.6 348
Grismer LL, Ismail LHB, Awang MT, Rizal SA, Ahmad AB (2014b) A new species of lowland 349
skink (genus Lipinia Gray, 1845) from northeastern Peninsular Malaysia. Zootaxa 3821(4): 457–350
464. https://doi.org/10.11646/zootaxa.3821.4.4 351
Grismer LL, Wood JrPL, Anuar S, Quah ESH, Muin MA, Mohamed M, Onn CK, Sumarli AX, 352
Loredo AI, Heinz HM (2014c). The phylogenetic relationships of three new species of the 353
Cyrtodactylus pulchellus complex (Squamata: Gekkonidae) from poorly explored regions in 354
northeastern Peninsular Malaysia. Zootaxa 3786 (3): 359–381. 355
https://doi.org/10.11646/zootaxa.3786.3.6 356
Grismer LL, Wood JrPL, Anuar S, Quah ESH, Muin MA, Onn CK, Sumarli AX, Loredo AI 357
(2015) Repeated evolution of sympatric, palaeoendemic species in closely related, co-distributed 358
lineages of Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) across a sky-island 359
archipelago in Peninsular Malaysia. Zoological Journal of the Linnean Society 174(4): 859–876. 360
https://doi.org/10.1111/zoj.12254 361
Grismer LL, Muin MA, Wood Jr. PL, Anuar S, Linkem CW (2016a) The transfer of two clades 362
of Malaysian Sphenomorphus Fitzinger (Squamata: Scincidae) into the genus Tytthoscincus 363
Linkem, Diesmos, & Brown and the description of a new Malaysian swamp-dwelling species. 364
Zootaxa 4092(2): 231–242. 365
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
28
Grismer LL, Wood JrPL, Syafiq MF, Badli-Sham BH, Rizal SA, Ahmad AB, Quah ESH (2016b) 366
On the taxonomy and phylogeny of the skinks Lipinia sekayuensis Grismer, Ismail, Awang, 367
Rizal, & Ahmad and Lipinia surda Boulenger from Peninsular Malaysia. Zootaxa 4147(1): 59–368
66. https://doi.org/10.11646/zootaxa.4147.1.3 369
Grismer LL, Wood JrPL, Ahmad AB, Baizul-Hafsyam BS, Afiq-Shuhaimi M, Rizal SA, Quah 370
ESH (2018) Two new Tytthoscincus Linkem, Diesmos, & Brown (Squamata; Scincidae) from 371
Peninsular Malaysia and another case of microsyntopy between ecologically specialised, 372
unrelated, leaf-litter species. Zootaxa 4425(1): 87–107. 373
https://doi.org/10.11646/zootaxa.4425.1.5 374
Haddad NM, Brudvig LA, Clobert J, Davies KF, Gonzalez A, Holt RD, Cook WM (2015) 375
Habitat fragmentation and its lasting impact on Earth's ecosystems. Science Advances 1(2): 376
e1500052. https://doi.org/10.1126/sciadv.1500052 377
Hillers A, Veith M, Rödel MO (2008) Effects of forest fragmentation and habitat degradation on 378
west African leaf-litter frogs. Conservation Biology 22: 762–772. 379
https://doi.org/10.1016/j.actao.2015.09.003 380
Hsieh TC, Ma KH, Chao A (2016) iNEXT: an R package for rarefaction and extrapolation of 381
species diversity (Hill numbers). Methods in Ecology and Evolution 7: 1451–1456. 382
https://doi.org/10.1111/2041-210X.12613 383
IUCN (2024) The IUCN Red List of Threatened Species 2024. International Union for 384
Conservation of Nature, Gland, Switzerland. https://www.iucnredlist.org. Accessed on: 2024–385
03–11. 386
Komaruddin SA, Mohamad NA, Fatihah-Syafiq M, Sham BHB, Mamat MA, Zakaria N (2020). 387
Dataset of reptiles in fragmented forests at Tasik Kenyir, Hulu Terengganu, Malaysia. Data in 388
Brief 28: 104994. https://doi.org/10.1016/j.dib.2019.104994 389
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
29
Luja VH, Herrando-P'erez S, Gonza'lez-Solis D, Luiselli L (2008) Secondary rain forests are not 390
havens for reptile species in tropical Mexico. Biotropica 40: 747–757. 391
https://doi.org/10.1111/j.1744-7429.2008.00439.x 392
Magintan D, Nor, S.M., Ean, T.P., Lechner, A.M., Azhar, B. (2017). The conservation value of 393
unlogged and logged forests for native mammals on the East Coast of Peninsular Malaysia. 394
Journal for Nature Conservation 40: 113–119. https://doi.org/10.1016/j.jnc.2017.10.005 395
Marini L, Bartomeus I, Rader R, Lami F (2019) Species-habitat networks: A tool to improve 396
landscape management for conservation. Journal of Applied Ecology 56: 923–928. 397
Myers N, Mittermeier RA, Mittermeier CG, Fonseca GABD, Kent J (2000) Biodiversity hotspots 398
for conservation priorities. Nature 403: 853–858. https://doi.org/10.1038/35002501 399
Nur Amalina MI, Azhari M, Norshaqinah A, Nor Azrin NA, Shukor MN, Aisah MS, Amirrudin 400
A, Grismer LL, Norhayati A (2017) Species composition of amphibians and reptiles in Tembat 401
Forest Reserve, Hulu Terengganu, Terengganu, Peninsular Malaysia. Malaysian Applied 402
Biology 46(4): 119–129. 403
Pirnat J, Hladnik D (2016) Connectivity as a tool in the prioritisation and protection of sub-urban 404
forest patches in landscape conservation planning. Landscape and Urban Planning 153: 129–139. 405
https://doi.org/10.1016/j.landurbplan.2016.05.013 406
Quah ESH, Sah SAM, Muin MA, Rahman NAA, Mustafa FS, Grismer LL (2013) Species 407
diversity of herpetofauna of Bukit Panchor State Park, Penang, Peninsular Malaysia. Malayan 408
Nature Journal 64(4): 193–211. 409
Quah ESH, Badli-Sham BH, Rahman MF-SA, Ahmad A, Chan KO (2021) A new record and 410
range extension for Philautus davidlabangi (Amphibia: Rhacophoridae) from Peninsular 411
Malaysia. Herpetology Notes 14:1181–1186. 412
RStudio Team (2023) RStudio: Integrated Development for R. Boston, USA. https://rstudio.com. 413
Accessed on: 2024–02–21 414
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
30
Shahirah-Ibrahim N, Badli-Sham BH, Shafie NJ, Ahmad A (2018) Species diversity of 415
freshwater turtles and tortoises in Terengganu, Malaysia. Journal of Sustainability Science and 416
Management Monograph 1: 1–27. 417
Sodhi NS, Koh LP, Brook BW, Ng PKL (2004) Southeast Asian biodiversity: An impending 418
disaster. Trends in Ecology and Evolution 19: 654–660. 10.1016/j.tree.2004.09.006 419
Sodhi NS, Bickford D, Diesmos AC, Lee TM, Koh LP, Brook BW, Sekercioglu CH, Bradshaw 420
CJA, (2008) Measuring the meltdown: Drivers of global amphibian extinction and decline. PLoS 421
One 3(2): e1636. https://doi.org/10.1371/journal.pone.0001636 422
Sodhi NS, Koh LP, Clements R, Wanger TC, Hill JK, Hamer KC, Clough Y, Tscharntke T, Posa 423
MRC, Lee TM (2010) Conserving Southeast Asian forest biodiversity in human-modified 424
landscapes. Biological Conservation 143: 2375–2384. 425
https://doi.org/10.1016/j.biocon.2009.12.029 426
Sulaiman MH, Lian CJ (2011) A checklist of chiropterans from a disturbed forest at Bukit 427
Maras, Terengganu. Malayan Nature Journal 63(4): 667–672. 428
Sumarli AX, Grismer LL, Anuar S, Muin MA, Quah ESH (2015) First report on the amphibians 429
and reptiles of a remote mountain, Gunung Tebu in northeastern Peninsular Malaysia. Check List 430
11(4): 1–32. https://doi.org/10.15560/11.4.1679 431
Sumarli A, Grismer LL, Wood Jr, PL, Ahmad AB, Rizal S, Ismail LH, Izam NAM, Ahmad N, 432
Linkem C W (2016) The first riparian skink (Genus: Sphenomorphus Strauch, 1887) from 433
Peninsular Malaysia and its relationship to other Indochinese and Sundaic species. Zootaxa 4173 434
(1): 29–44. https://doi.org/10.11646/zootaxa.4173.1.3 435
Syafiq MF, Badli-Sham BH, Grismer LL, Ahmad AB (2023) Uneven species occurrence and 436
richness of lowland snakes (Serpentes, Squamata) in Terengganu, Peninsular Malaysia, with new 437
locality records. ZooKeys 1168: 11–39. https://doi.org/10.3897/zookeys.1168.95833 438
Author-formatted, not peer-reviewed document posted on 14/03/2024. DOI: https://doi.org/10.3897/arphapreprints.e122806
31
Syafiq MF, Badli-Sham BH, Ibrahim NS, Ismail LH, Amin MAM, Xian GS, Ariffin RAM, Afiq-439
Suhaimi, M, Men LK, Danelo DA, Aqmal-Naser M, Fahmi-Ahmad M, Rizal SA, Belabut DM, 440
Quah ESH, Ahmad, A. B. (2024) Taxonomic composition, diversity, and conservation status of 441
reptilian fauna at Sekayu Lowland Forests, Terengganu, Peninsular Malaysia. Russian Journal of 442
Herpetology 31(1): 14–23. https://doi.org/10.30906/1026-2296-2024-31-1-14-23 443
Thompson ME, Donnelly MA (2018) Effects of secondary forest succession on amphibians and 444
reptiles: A review and meta-analysis. Copeia 106 (1): 10–19. https://doi.org/10.1643/CH-17-654 445
Uetz P, Freed P, Aguilar R, Reyes F, Kudera J, Hosek J (2023) The Reptile Database. Czech 446
Republic. http://www.reptile-database.org. Accessed on: 2024–03–11 447
Vitt LJ, Caldwell JP (2001) The effects of logging on reptiles and amphibians of tropical forests. 448
In: Fimbel, R.A., Grajal, A., Robinson, J. (Eds.), The Cutting Edge: Conserving Wildlife in 449
Logged Tropical Forests. Columbia University Press, New York, 239–259. 450
Appendix 451
Table A. List of voucher specimens from Bukit Maras catalogued with the UMTZC voucher 452
code numbers. 453
Voucher No. (UMTZC) Species Name
1701 Gonocephalus liogaster
1705 Cyrtodactylus quadrivirgatus
1706 Phrynoides aspera
1772 Hylarana nicobarensis
1773 Calotes versicolor
1774 Eutropis multifasciata
1882 Cyrtodactylus consobrinus
1823 Hemiphyllodactylus typus
1825 Limnonectes deinodon
1828 Hylarana labialis
1831 Pseudorhabdion longiceps
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