Installation of sulfonyl fluorides onto primary amides

preprint OA: closed CC-BY-4.0
📄 Open PDF Full text JSON View at publisher

Abstract

A protocol of SO2F2 mediated installation of sulfonyl fluoride onto primary amide was developed providing a new portal to sulfur(VI) fluoride exchange (SuFEx) click chemistry. The generated molecules contain pharmaceutically important amide and -SO2F moieties for application in discovery of new therapeutics.
Full text 16,674 characters · extracted from oa-pdf · 7 sections · click to expand

Abstract

A protocol of SO 2F2 mediated installation of sulfonyl fluoride onto primary amide was developed providing a new portal to sulfur(VI) fluoride exchange (SuFEx) click chemistry. The generated molecules contain pharmaceutically important amide and -SO2F moieties for application in discovery of new therapeutics.

Keywords

N-fluorosulfonyl amides; Sulfuryl fluoride (SO2F2); primary amides

Introduction

Sulfur(VI) fluoride exchange (SuFEx), is a new class of click chemistry developed by Professor K. B. Sharpless and coworkers in 2014, for creating molecular connections based on the unique stability -reactivity pattern of S VI-F bond with absolute reliability and unprecedented efficiency , which has been widely applied in organic synthesis, chemical biology and drug discovery [1-19]. Among all the developed S(VI) -F species, sulfonyl fluoride (RSO 2F) was specifically recognized as unique scaffold for covalent protein inhibitors and biological probes with the affinity -driven activation for forming covalent linkages with the amino acid residues of protein binding sites ( Figure 1) [20]. The smallest member of this family, methyl sulfonyl fluoride (MSF), is known as a selective and irreversible inhibitor of acetylcholinesterase (AChE) [21-22]. The sulfonyl fluoride inhibitors NSC 127755 was found for specifically modifying tyrosine -31 of DHFR in chicken liver [23]. The nucleotide -derived probe 5’ -p-fluorosulfonylbenzoyl adenosine (5’ -FSBA) was used for labelling the second nucleotide binding site, the adenine nucleotide regulatory site [24]. In addition, aryl fluorosulfates have also been widely applied as sustainable alternative to aryl halides in coupling reactions and as potential coval ent probes in protein profiling [14, 25-28]. Phenols (or alcohols) and amines as the most common nucleophiles have been found to undergo SuFEx with different S VI connectors to provide diversified sulfonyl fluoride 2 derivatives. The reactions of phenols (or alcohols) with SO 2F2 [29] or the fluorosulfuryl imidazolium salt were developed for mild and effective formation of the corresponding fluorosulfates to act as biology probes in chemical proteomics studies (Scheme 1, a) [1, 30]. On the other hand, the reactions of primary and secondary aliphatic amines as well as anilines with SO 2F2 or the fluorosulfuryl imidazolium salt have been achieved for assembly of N-sulfonyl fluorides [1, 30], and the corresponding products have served as important active precursors for the development of noncovalent inhibitors ( Scheme 1 , a) [1, 30, 31]. Amides are the key connections in proteins, amides, and a vast number of synthetic structures, such as polymers, biologically active compounds and pharmaceutical products [32-35]. However, the installation of sulfonyl fluoride (SO 2F) onto nitrogen atoms of amides has not been achieved, which, if accomplished, would provide a very important class of sulfonyl fluorides, namely, N-fluorosulfonyl amides, for the development of potent ial covalent inhibitors [1-24]. The Roesky group described a pioneering protocol for the synthesis of N-fluorosulfonyl amides from fluorosulfonylisocyanate (Scheme 1, b) [36]. And the available procedures for the preparation of N-fluorosulfonyl amides are very limited which relied on using either the isocyanate approach, or theamidosulfofluoride (FSO 2NH2) [37-39]. Therefore, the development of new method for the assembly of N-fluorosulfonyl amides from cheap and abundant reagent is highly desirable. Herein, we report the first, to the best of our knowledge, SO 2F2 mediated N-fluorosulfonylation [40-42] of amides by using DBU as base for the constructions of a series N-acyl-substituted sulfamoyl fluorides (Scheme 1, c). 3 Figure 1. Representative sulfonyl fluorides compounds applied in medicinal chemistry and chemical biology. Scheme 1. Background of synthesis of N-fluorosulfonyl amides and fluorosulfates.

Results

and discussion Initially, benzamide 1a was selected as model substrate to test the feasibility of this proposed N-fluorosulfonylation reaction in the presence of Cs 2CO3 in DMSO under SO 2F2 atmosphere (balloon) at 50 oC, and excitingly, the desired product benzoylsulfamoyl fluoride 2a was obtained in 25% yield ( Table 1 , entry 1). Encouraged by this preliminary success, several common bases were evaluated, among which, 1,8 -diazabicycloundec-7-ene (DBU) catalysed the proposed transformation most effectively to provide the desired product 2a in nearly quantitative yield ( Table 1 , entries 2 -7). Subsequently, possible solvent effects were investigated with different solvents, among which, DMSO was found to be the best solvent. Decreasing the temperature from 50 oC to 40 oC or even room temperature, or cutting down the amount of DBU to 4 equivalent resulted in decreased yields (Table 1, entries 13-15). Table 1. Optimization of the reaction conditions.a 4 Entry Base Solvent Temp. (oC) Yield (2a, %)b 1 Cs2CO3 DMSO 50 25 2 K2CO3 DMSO 50 13 3 KOH DMSO 50 19 4 NaOH DMSO 50 15 5 DBU DMSO 50 99 6 Et3N DMSO 50 - 7 DIPEA DMSO 50 - 8 DBU NMP 50 81 9 DBU MeCN 50 75 10 DBU Toluene 50 87 11 DBU Dioxane 50 60 12 DBU THF 50 79 13 DBU DMSO 40 82 14 DBU DMSO R.T. 51 15c DBU DMSO 50 69 a Reaction condition: benzoyl amide 1a (1.0 mmol, 1.0 eq.), DBU (5.0 eq.), and DMSO (1 .0 mL) stirred with a SO2F2 balloon for 12h. b Isolated yield. c 4 equiv of DBU was used. With the optimized conditions in hand, we next turned our efforts to investigate the scope of substrates. Under the standard conditions, a variety of substituted amides were examined which were smoothly converted to their corresponding substituted benzoylsulfamoyl fluoride derivatives ( Scheme 2) in moderate to excellent isolated yields. Both electron-withdrawing groups, such as halogen atoms ( 1b-1d, 1j, 1m-1n), NO2 (1e, 1k) and CF 3 (1f), and electron -donating groups, such as Me ( 1g, 1l, 1o), tert-butyl (1h) and 2- naphthyl (1i) on the aromatic rings, were well tolerated under this condition. It was worth noting that not only para-(1b-1h) but also meta- (1j-1l) and ortho- (1m-1o) substituted benzamides a ff orded the desired products in generally good yields. Arylcarboxylic amides (1p-1q) bearing bis -substitutions also behaved well under the standard conditions. 5 Heterocyclic aromatic carboxylic amides ( 1r-1u), tolerated well and afforded the target products in 56 -94% yields. In addition, alkyl carboxylic amides were also smoothly transformed into the corresponding products (2v-2z). a Reaction conditions: a mixture of amides ( 1, 1.0 mmol), DBU (5.0 mmol, 5.0 eq.), DMSO (1.0 mL) was added to a reaction flask before SO 2F2 was introduced into the stirred reaction mixture by slowly bubbling from a balloon, and the mixture was allowed to stir at 50 oC for 12h. b Isolated yields. c 50 oC, 18 h. Scheme 2. Screening of substrate scope of amides a, b Interestingly, during the work -up process of drying 2a with Na 2SO4, a colourless crystal 4e was observed and its structure was confirmed by XRD analysis. We speculate that the tautomerism of amides [43] may occur in the reaction process and the tautomers 3e could react with Na 2SO4 to generate 4e, which indicated that N -H connected with two electron - withdrawing groups (carbonyl, and SO 2F) can behave as an acid to donate a proton for 6 chemical transformations. This property of fluoro sulfonyl amides 2 may attract significant attention for further applications. Scheme 3. Amide resonance model and X -ray single crystal structure of 4e (CCDC 1906002).

Conclusions

In conclusion, we have developed a novel method for N-fluorosulfonylation of amides. This simple, convenient, mild and protocol provides a portal to a class of novel sulfonyl fluorides for SuFEx click chemistry with great potential to be applied in the development of covalent inhibitors. Further studies of th is class of molecules in chemical biology and drug discovery are underway in our laboratory. Conflicts of interest The authors declare no competing financial interest.

Acknowledgements

We are grateful to the National Natural Science Foundation of China (Grant No. 21772150), the Wuhan applied fundamental research plan of Wuhan Science and Technology Bureau (grant NO. 2017060201010216), the 111 Project (No. B18038) and Wuhan University of Technology for the financial support.

References

1. Dong, J.; Krasnova, L.; Finn, M. G.; Sharples, K. B. Angew. Chem., Int. Ed. 2014, 53, 9430-9448. doi :10.1002/anie.201309399; Angew. Chem. , 2014, 126, 9584 -9602. doi:10.1002/ange.201309399. 2. Wang, H.; Zhou, F.; Ren, G.; Zheng, Q.; Chen, H.; Gao, B.; Klivansky, L.; Liu, Y.; Wu, B.; Xu, Q.; Lu, J.; Sharpless K. B.; Wu, P. Angew. Chem., Int. Ed. 2017, 56, 11203-11208. doi:10.1002/anie.201701160; Angew. Chem., 2017, 129, 11355-11360. doi:10.1002/ange.201701160. 7 3. Gao, B.; Zhang, L.; Zheng, Q.; Zhou, F.; Klivansky , L. M.; Lu, J.; Liu, Y.; Dong, J.; Wu, P.; Sharpless, K. B. Nat. Chem. 2017, 9, 1083-1088. doi:10.1038/NCHEM.2796. 4. Liu, Z.; Li, J.; Li, S.; Li, G.; Sharpless, K. B.; Wu, P.; J. Am. Chem. Soc. 2018, 140, 2919-2925. doi:10.1021/jacs.7b12788. 5. Qin, H. L.; Zheng, Q.; Bare, G. A. L.; Wu, P.; Sharpless, K. B. Angew. Chem. Int. Ed. 2016, 55, 14155 -14158. doi: 10.1002/anie.201608807; Angew. Chem. , 2016, 128, 14361-14364. doi:10.1002/ange.201608807. 6. Zha, G. F.; Zheng, Q.; Leng , J.; Wu, P.; Qin, H. L.; Sharpless, K. B. Angew. Chem. Int. Ed. 2017, 56, 4849 -4852. doi: 10.1002/anie.201701162; Angew. Chem. , 2017, 129, 4927-4930. doi:10.1002/ange.201701162. 7. Schimler, S. D.; Cismesia, M. A.; Hanley, P. S.; Froese, R. D. J.; Jansma, M. J.; Bland, D. C.; Sanford, M. S. J. Am. Chem. Soc. 2017, 139, 1452 -1455. doi:10.1021/jacs.6b12911. 8. Epifanov, M.; Foth, P. J.; Gu, F.; Barrillon, C.; Kanani, S. S.; Higman, C. S.; Hein, J. E.; Sammis, G. M. J. Am. Chem. Soc. 2018, 140, 16464 -16468. doi:10.1021/jacs.8b11309. 9. Liang, Q.; Xing, P.; Huang, Z.; Dong, J.; Sharpless, K. B.; Li, X.; Jiang, B. Org. Lett. 2015, 17,1942-1945. doi:10.1021/acs.orglett.5b00654. 10. Zhang, E.; Tang, J.; Li, S.; Wu, P.; Moses, J. E.; Sharpless, K. B. Chem. Eur. J. 2016, 22, 5692-569. doi:10.1002/chem.201600167. 11. Fang, W. Y.; Leng, J.; Qin, H. L. Chem. Asian J. 2017, 12, 2323 -2331. doi:10.1002/asia.201700891. 12. Wang, X. Y.; Leng, J.; Wang, S. M.; Asiri, A. M.; Marwani, H. M.; Qin, H. L. Tetrahedron Lett. 2017, 58, 2340-2343. doi:10.1016/j.tetlet.2017.04.070. 13. Fang, W. Y.; Huang, Y. M.; Leng, J.; Qin, H. L. Asian J. Org. Chem. 2018, 7, 751- 756. doi:10.1002/ajoc.201800037. 14. Revathi, L.; Ravindar, L.; Leng, J.; Rakesh, K. P.; Qin, H. L. Asian J. Org. Chem. 2018, 7, 662-682. doi:10.1002/ajoc.201700591. 15. Zhao, C.; Fang, W. Y.; Rakesh, K. P.; Qin, H. L. Org. Chem. Front. 2018, 5, 1835- 1839. doi:10.1039/C8QO00295A. 16. Zha, G. F.; Fang, W. Y.; Li, Y. G.; Leng, J.; Chen, X.; Qin, H. L. J. Am. Chem. Soc. 2018, 140, 17666-17673. doi:10.1021/jacs.8b10069. 8 17. Zhao, C.; Zha, G. F.; Fang, W. Y.; Rakesh, K. P.; Qin, H. L. Eur. J. Org. Chem. 2019, 2019, 1801-1807. doi:10.1002/ejoc.201801888. 18. Zhang, X.; Rakesh, K. P.; Qin, H. L. Chem. Commun. 2019, 55, 2845 -2848 doi:10.1039/C8CC09693G. 19. Wang, S. M. ; Zhao, C.; Zhang, X.; Qin, H. L. Org. Biomol. Chem. 2019, 17, 4087- 4101. doi:10.1039/C9OB00699K. 20. Narayanan, A.; Jones, L. H. Chem. Sci. 2015, 6, 2650-2659. doi:10.1039/C5SC00408J. 21. Moss, D. E.; Berlanga, P. M.; Hagan, M.; Sandoval, H.; Ishida, C. Alzheimer Dis. Assoc. Disord. 1999, 13, 20-25. 22. Pericle, F.; Braglia, E.; University of Texas System, USA, 2010. 23. Kumar, A. A.; Mangum, J. H.; Blankenship, D. T.; Freisheim, J. H. J. Biol. Chem. 1981, 256, 8970-8976. 24. Esch, F. S.; Allison, W. S. J. Biol. Chem., 1978, 253, 6100-6106. 25. Hanley, P. S.; Clark, T. P.; Krasovskiy, A. L.; Ober, M. S.; O’Brien, J. P.; Staton, T. S. ACS Catal. 2016, 6, 3515-3519. doi:10.1021/acscatal.6b00865. 26. Mortenson, D. E.; Brighty, G. J.; Plate, L.; Bare, G.; Chen, W.; Li, S.; Wang, H.; Cravatt, B. F.; Forli, S.; Powers, E. T.; Sharpless, K. B.; Wilson, I. A.; Kelly, J. W. J. Am. Chem. Soc. 2018, 140, 200-210. doi:10.1021/jacs.7b08366. 27. Chen, W.; Dong, J.; Plate, L.; Mortens on, D. E.; Brighty, G. J.; Li, S.; Liu, Y.; Galmozzi, A.; Lee, P. S.; Hulce, J. J.; Cravatt, B. F.; Saez, E.; Powers, E. T.; Wilson, I. A.; Sharpless, K. B.; Kelly, J. W. J. Am. Chem. Soc. 2016, 138, 7353 -7364. doi:10.1021/jacs.6b02960. 28. Gilles, P.; Veryser , C.; Vangrunderbeeck, S.; Ceusters, S.; Meervelt, L. V.; Borggraeve, W. M. D. J. Org. Chem. 2019, 84, 1070 -1078. doi:10.1021/acs.joc.8b02785. 29. Andersen, M. P. S.; Blake, D. R.; Rowland, F. S.; Hurley M. D.; Wallington, T. J. Environ. Sci. Technol. 2009, 43, 1067-1070. doi:10.1021/es802439f. 30. Guo, T.; Meng, G.; Zhan, X.; Yang, Q.; Ma, T.; Xu, L.; Sharpless, K. B.; Dong, J. Angew. Chem. Int. Ed. 2018, 57, 2605-2610. doi:10.1002/anie.201712429; Angew. Chem. 2018, 130, 2635-2640. doi:10.1002/ange.201712429. 31. Spillane, W.; Malaubier, J. B. Chem. Rev. 2014, 114, 2507 -2586. doi:10.1021/cr400230c. 9 32. Greenberg, A.; Breneman, C. M.; Liebman, J. F. The Amide Linkage: Structural Significance in Chemistry, Biochemistry and Materials Science , eds., Wiley - Interscience, Hoboken, 2000. 33. Wieland, T.; Bodanszky, M. The World of Peptides: A Brief History of Peptide Chemistry; Springer-Verlag, New York, 1991. 34. Figueiredo, R. M. d.; Suppo, J. S.; Campagne, J. M. Chem. Rev. 2016, 116, 12029- 12122. doi:10.1021/acs.chemrev.6b00237. 35. Crespo, L.; Sanclimens, G.; Pons, M.; Giralt, E.; Royo, M.; Albericio, F. Chem. Rev. 2005, 105, 1663-1682. doi:10.1021/cr030449l. 36. Roesky, H. W.; Giere, H. H. Chem. Ber. 1969, 102, 3707 -3712. doi:10.1002/cber.19691021112. 37. Clauβ, K.; Friedrich, H. J.; Jensen, H. Liebigs Ann. Chem. 1974, 1974, 561 -592. doi:10.1002/jlac.197419740404. 38. Pietsch Hartmut Dr.; Clauss Karl Dr. Verfahren Zur Herstellung Von Acetoacetamid - N-sulfofluorid. DE Patent 2,453,063, 1976. 39. Linkies Adolf; Reuschling Dieter. Process for preparing crystalline salts of acetoacetamide-N-sulfofluoride. US Patent 4618455, 1986. 40. Appel, R.; Rittersbacher, H. Chemische Berichte. 1964, 97, 849 -851. doi:10.1002/cber.19640970330. 41. Appel, R.; Montenarh, M. Chemische Berichte. 1976, 109, 2437 -2441. doi:10.1002/cber.19761090710. 42. Berana, M.; Př íhoda, J.; Taraba, J. Polyhedron. 2010, 29, 991 -994. doi:10.1016/j.poly.2009.11.024. 43. Liu, C.; Shi, S.; Liu, Y.; Liu, R.; Lalancette, R.; Szostak, R.; Szostak, M. Org. Lett. 2018, 20, 7771-7774. doi:10.1021/acs.orglett.8b03175.

Text is read by the "Ask this paper" AI Q&A widget below. Extraction quality varies by source — PMC NXML preserves structure cleanly, OA-HTML may include some navigation residue, and OA-PDF can have broken hyphenation. The publisher copy (via DOI) is the canonical version.

My notes (saved in your browser only)

Ask this paper AI returns verbatim quotes from the full text · source: oa-pdf

Answers must be backed by verbatim quotes from this paper's full text. Hallucinated quotes are dropped automatically; if no verbatim passage answers the question, we say so. How this works

Citation neighborhood (no data yet)

We don't have any in-corpus citations linked to this paper yet. The paper's references may be in our DB but unresolved to ``paper_id`` (resolution happens at ingest when the cited DOI matches a row we already have). Run the cross-source citation reconcile pass to retry.

Source provenance

europepmc
last seen: 2026-05-19T01:45:01.086888+00:00
unpaywall
last seen: 2026-05-22T02:00:06.705733+00:00
License: CC-BY-4.0