Keywords
Norepinephrine, locus coeruleus, pupil-linked arousal, GLM-HMM modeling, the
primary somatosensory cortex, the prefrontal cortex, tactile detection task
Contact Info: Correspondence should be addressed to:
Professor Qi Wang
Department of Biomedical Engineering
Columbia University
ET 351, 500 W. 120
th Street,
New York, NY 10027,
Phone: 212.854.3657
Email:
[email protected]
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Abstract
Animals must integrate sensory information, ignore behaviorally irrelevant stimuli, and respond to
behaviorally relevant stimuli to find food, find mates, avoid predators, and ultimately survive. In
mammals, these goal-directed behaviors require the coordinated activity of many brain regions,
including sensory and prefrontal cortices as well as neuromodulatory brainstem nuclei like the
locus coeruleus (LC), which is the brain’s primary source of norepinephrine. Norepinephrine
resulting from LC activity and arousal indexed by pupil size exert strong influences on goal-
directed behavior. We explored the relationships between pupil size, cortical noradrenergic
dynamics, and behavior in a tactile signal detection task. We monitored pupil dynamics and
fluorescent GRAB
NE signals in somatosensory and prefrontal cortices simultaneously during task
execution and found that pupil size and synchronization of GRAB NE signals at baseline were
strong predictors of whether animals chose to respond but not baseline cortical GRAB NE levels.
We also employed a generalized linear model - hidden Markov model (GLM-HMM) framework to
identify distinct, stable behavioral states throughout the task that optimally account for task
performance. We found distinct psychometric curves, task-evoked pupil dynamics, and cortical
NE dynamics across these behavioral states.
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Significance Statement
Behavioral state strongly shapes goal-directed behavior, which in turn depends on the
coordinated activity of distributed brain regions, including the sensory and prefrontal cortices. By
simultaneously measuring pupil size and cortical norepinephrine dynamics, and by identifying
psychophysically distinct behavioral states during a tactile detection task, this study establishes
a mechanistic link between pupil-linked arousal, norepinephrine signaling in somatosensory and
prefrontal cortices, and behavioral outcomes. These findings provide new insight into how the
locus coeruleus – norepinephrine system regulates perception and decision-making.
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Introduction
Integrating sensory information, responding to behaviorally relevant stimuli, and ignoring
behaviorally irrelevant stimuli is essential to animal survival (Wimmer et al., 2015; Speed and
Haider, 2021). Goal-directed behaviors require the coordinated activity of multiple brain regions:
thalamus and sensory cortices process and encode stimuli; prefrontal cortex is involved in
decision making, planning, and working memory; and neuromodulatory brainstem nuclei
dynamically modulate processing in other brain regions through attention and arousal (Pezzulo
et al., 2014; Dahl et al., 2022; Cerpa et al., 2023; Jordan and Keller, 2023; Ghosh and Maunsell,
2024; Hansen et al., 2024; Osorio-Forero et al., 2024; Jensen et al., 2025; Kelley et al., 2025). In
particular, activity in the locus coeruleus, the brain's primary source of norepinephrine, has been
shown to modulate feedforward processing of behaviorally-relevant stimuli and correlate with
performance in goal-directed behaviors (Devilbiss et al., 2006; de Gee et al., 2017; Clewett et al.,
2018; Totah et al., 2018; Vazey et al., 2018; Rodenkirch et al., 2019; Orlando et al., 2023; Grimm
et al., 2024; Rodenkirch and Wang, 2024). Recent developments in genetically encoded
fluorescent sensors in vivo have opened a window into the dynamics of norepinephrine released
in brain regions targeted by LC projections during sensory and cognitive processing, learned
behaviors, and sleep (Feng et al., 2019; Breton-Provencher et al., 2022; Kjaerby et al., 2022;
Osorio-Forero et al., 2024; Liu et al., 2025).
Pupil diameter is a reliable physiological biomarker of arousal and predictor of task performance
in perceptual and cognitive tasks (Hess and Polt, 1960; Kahneman and Beatty, 1966; Nassar et
al., 2012; de Gee et al., 2014; Reimer et al., 2014; Ebitz and Platt, 2015; McGinley et al., 2015;
Vinck et al., 2015; Urai et al., 2017; Schriver et al., 2020; Narasimhan et al., 2023). There is also
strong evidence of a link between neural activi ty in LC and dynamic changes in pupil size;
however, the relationships between LC activity, pupil size, and arousal are strongly nonlinear and
nonexclusive (Joshi et al., 2016; Liu et al., 2017). Although large pupil dilations often coincided
with bursts of LC firing, reflecting arousal or salient stimuli, whether pupil size alone reliably
indexes spiking activity in LC remains hotly debated (Megemont et al., 2022). Additionally, while
arousal is a strong predictor of behavior, mice also exhibit distinct strategies during goal directed
behaviors (Ashwood et al., 2022). However, the relationship between those behavioral strategies
and arousal, indexed by pupil size or noradrenergic dynamics, remains unclear.
Here we explored the relationships between pupil size fluctuations, noradrenergic dynamics, and
behavior in a tactile stimulus detection task. Mice were trained to respond to behaviorally relevant
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tactile signals in pursuit of water rewards. We simultaneously monitored pupil dynamics and
fluorescent GRABNE signals in somatosensory and prefrontal cortices during the task. We found
that baseline pupil size and baseline synchronization of GRABNE signals, but not baseline cortical
GRABNE levels, were strong predictors of whether animals decided to respond. We also employed
a generalized linear model - hidden Markov model (GLM-HMM) framework to identify behavioral
states throughout the behavioral task. The behavioral states identified by the GLM-HMM were
psychometrically distinct and temporally stable. Moreover, we found distinct task-evoked pupil
dynamics and cortical NE dynamics across these behavioral states.
Methods
Surgery
All experiments were approved by the Institutional Animal Care and Use Committee
(IACUC) at Columbia University and were c onducted in compliance with NIH guidelines. Mice
(B6, Jax #: 000664) underwent survival surgery for AAV injection and implantation of optical fibers
and head plate at age of 3-6 months. Mice were initially anesthetized with isoflurane in oxygen
(5% induction, 2% maintenance) and then secured in a stereotaxic frame. Body temperature was
maintained at ~37 ℃ using a feedback-controlled heating pad (FHC, Bowdoinham, ME). After the
mouse’s condition stabilized but before an incision was made on the scalp, lidocaine
hydrochloride and buprenorphine (0.05 mg/kg) were administered subcutaneously to ensure
analgesics were on board during the whole surgery. To measure cortical NE dynamics during
tactile signal detection tasks, AAVs encoding GRAB
NE (AAV9-hSyn-NE2h, WZ Biosciences) were
injected into the PFC (AP: +2.3 mm, ML: 1.2 mm, DV: -2.0 mm) and S1 (AP: -1.30 mm, ML: +3.3
mm, DV: -0.72). Before the injection, small burr holes were drilled above the PFC and S1 and
saline was applied to each craniotomy to prevent exposed brain surface from drying out. Pulled
capillary glass micropipettes were back-filled with AAV solution, which was subsequently injected
into the target brain regions (~200 nL each site) at 0.8 nL/s using a precision injection system
(Nanoliter 2020, World Precision Instruments, Sarasota, FL). The micropipette was left in place
for at least 10 minutes following each injection and then slowly withdrawn. Following GRAB
NE
AAV injection, an optical fiber (200 μm diameter, NA = 0.39) was implanted with the tip of the fiber
placed approximately 0.15 mm above the injection site. Metabond (Parkell Inc., Edgewood, NJ)
was used to build a headcap to bond the fibers. The ferrules and headplate were then cemented
in place with dental acrylic. At the conclusion of the surgery, Baytril (5 mg/kg) and Ketoprofen (5
mg/kg) were administered. Four additional doses of Baytril and two additional doses of Ketoprofen
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were provided every 24 hours after the surgery day. Animals’ weight was measured at least once
per day for 5 days.
Fiber photometry recording
Fiber photometry recording was performed approximately 3 weeks following surgery to
allow sufficient time for viral expression. Fluorescence signals mediated by the GRAB NE sensors
were recorded using a 2-channel fiber photometry system (Doric Lenses). For each channel, the
excitation light with 465 nm wavelength was generated by an LED (CLED_465, Doric Lenses)
and passed through a MiniCube (iFMC4_AE (405)E(460–490)_F(500–550)_S, Doric Lenses).
Emission fluorescence from the GRAB
NE sensor was measured by an integrated PMT detector in
the MiniCube. The fiber photometry recordings were run in a ‘Lock-in’ mode controlled by Doric
Neuroscience Studio (V5.4.1.12), where the intensity of the excitation lights was modulated at
frequencies of 208.62 Hz and 572.21 Hz to avoid contamination from other light sources in the
room and crosstalk between the excitation lights (Liu et al., 2025). The demodulated signal
processed by the Doric fiber photometry console was low-pass filtered at 25 Hz and sampled at
12 kHz with a 16-bit ADC. The fiber photometry system was synchronized with the behavioral
apparatus through TTLs generated by the xPC target real-time system (MathWorks,
Massachusetts). All photometry data were dec imated to 120 Hz by Doric Neuroscience Studio
software and saved for offline analysis. We used signal background estimation with a 3 s moving
window to remove drifts in the baseline signal while preserving peaks and oscillations (MATLAB
function msbackadj).
Pupillometry
Pupil recordings were obtained using a custom pupillometry system (Schriver et al., 2018).
The camera captured images at 10 frames per second via TTL triggers from the xPC real-time
system. Pupil images were streamed to a high-speed solid-state drive for offline analysis. As
previously described, the DeepLabCut toolbox was used for automated segmentation of the pupil
contour (Weiss et al., 2025). Elliptical regression was then applied to fit the labeled points,
enabling the computation of pupil size based on the fitted contour. To ensure segmentation
accuracy, approximately 5% of segmented images were randomly selected and inspected. Pupil
size during periods of blinks was estimated by interpolating over frames immediately preceding
and following the blinks. If DeepLabCut did not recognize pupil contour due to either poor video
quality or animal’s eyelid covering a significant portion of pupil in >33% of the recorded video
frames, the session was excluded from pupillometry analysis. Prior to further analysis, a fourth-
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order non-causal low-pass filter with a cutoff frequency of 3.5 Hz was applied to the pupil size
data (Joshi et al., 2016) .
Behavioral task
Mice (n=4) were trained to respond to tactile stimuli applied to their whiskers via air puffs
by licking a water spout. Each trial began with an onset tone followed by a delay period lasting
4-10 s. During the delay period, 1-3 distractor air puffs (not aimed at the mouse or its whiskers,
but close enough to hear) were delivered. Responses to a distractor stimulus (licking the water
spout within 500 ms of the distractor) resulted in restarting the trial. The mouse needed to withhold
licks for 2 s at the end of the delay period in order for a stimulus to be delivered. On 40% of trials,
no stimulus (0 PSI) was delivered (i.e. catch trials). On the remaining 60% of trials, air puffs were
delivered to left whiskers at different pressures (0.5 – 20 PSI) with equal probability. Stimulus
delivery was followed by a 500 ms window of opportunity, during which the mouse could respond
to tactile stimulus by licking the water spout. Responses to tactile stimuli within the window of
opportunity were rewarded with 2.3 µL of sweetened water (10% sucrose) followed by a 2 s cool
down period before the start of the next trial. Responses to 0 PSI stimuli on catch trials resulted
in a 15 s timeout before the start of the next trial. Sessions lasted 129 ± 5 trials (56.4 ± 0.1 mins).
Histology
At the end of the study, mice were transcardially perfused with PBS followed immediately
by ice-cold 4% paraformaldehyde. The brain was removed carefully and post-fixed overnight at 4
°C in 4% paraformaldehyde, and then cryopreserv ed in a 30% sucrose (wt/vol) in PBS solution
for 3 days at 4 ℃. Brains were embedded in Optimum Cutting Temperature Compound, and 30-
μm coronal slices were sectioned using a cryostat. Brain slices were washed 4x in PBS and then
incubated in 10% normal goat serum contained with 0.5% Triton X-100 in PBS for 2 hours. This
was followed by primary antibody incubation overnight at room temperature using either a chicken
anti-GFP primary antibody (1:500), or a mixture of chicken anti-TH (1:500) and rabbit anti-ChAT
(1:300) primary antibodies. On the next day, slices were washed 3x in PBS + Tween (0.0005%)
solution followed by secondary antibody incubation for 2 hours at room temperature using an
Alexa Fluor 488-conjugated goat anti-chicken (1:800), or a mixture of Alexa Fluor 647-conjugated
goat anti-rabbit (1:500) and Alexa Fluor 488-conjugated goat anti-chicken (1:800). The slices were
then washed 3x in PBS + Tween solution and 1x with PBS only followed by coverslipping using
Fluoromount-G medium with DAPI. Slices were imaged using 8X objective in a slide scanner
(Nikon AZ100) for verification of AAV transfection.
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Analyses
All analyses were performed using custom code written in MATLAB (Mathworks, Natick,
Ma) and Python available at https://github.com/Neural-Control-Engineering/Neurodynamic-
control-toolbox. All pupillometry and fiber photometry recordings were z-scored prior to further
analyses. Baseline measurements were averaged over 0.5 s prior to stimulus delivery. The
magnitude of stimulus-induced pupil dilations and increases in NE signal were computed by
subtracting the baseline value from the average pupil size during dilations or from GRAB
NE signal
over the 6 s following stimulus delivery. When computing cross correlations between GRAB NE in
S1 and PFC, we used 4 s of baseline activity.
We employed an approach combining generalized linear models and hidden Markov
models (GLM-HMM) developed by Ashwood et al. (2022) to predict responses to tactile stimuli
and identify behavioral states. For each mouse, we trained GLM-HMM models with 2-5 states
using response on the previous trial (lick or no lick) and stimulus strength on the current trial,
outcome on the previous trial (correct or incorrect) and stimulus strength on the current trial, or
baseline pupil area and stimulus strength on the current trial as regressors. Trials were shuffled
for training, and we used five-fold cross validation for training and testing throughout. We also
compared performance on the GLM-HMM models to a classical lapse model (Prins, 2012;
Ashwood et al., 2022) All analyses were performed on the 4-state model using baseline pupil
area and stimulus strength on the current trial as regressors.
Statistics
All statistical tests were two-sided. A one-sample Kolmogorov-Smirnov test was first used
to assess the normality of data before performing statistical tests. If the samples were normally
distributed, a paired or unpaired t-test was used. Otherwise, the two-sided Mann-Whitney U-test
was used for unpaired samples or the two-sided Wilcoxon signed-rank test for paired samples.
Bonferroni correction was used for multiple comparisons.
Results
Behavioral performance in tactile detection tasks
To understand behaviorally relevant NE dynamics in the prefrontal cortex (PFC) and the
Barrel cortex (S1), we trained 4 mice to perform tactile detection tasks (Stuttgen and Schwarz,
2008; Ollerenshaw et al., 2012). In the task, the animals were required to lick within the window
of opportunity (500 ms) to indicate the perception of whisker stimulation induced by a brief air puff
with different pressures (Figure 1A, B, see Methods). To gauge false alarm rate for the animals,
approximately 40% of all trials were catch trials, in which no air puff was delivered. Following the
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presentation of the tactile stimulus, the animals usually licked within approximately 400 ms to
indicate the detection of the tactile stimulus. We found that the intensity of tactile stimuli had no
effects on reaction time ( Figure 1C , p=0.58, one-way ANOVA test). As expected, response
probability increased as the intensity of tactile stimulus increased ( Figure 1D,E), resulting in a
monotonically increasing perceptual sensitivity with stimulus intensity (Figure 1F).
Task-evoked pupil dynamics in whisker detection tasks
We have previously showed that task-evoked phasic pupil dilation reflects different
cognitive components in a perceptual decision making task in rats (Schriver et al., 2020). In this
study, we also imaged pupil size of the mice throughout the behavioral task. Similar to rats
(Schriver et al., 2018), the pupil of the mice fluctuated throughout the task (Figure 2A). Moreover,
the animals’ pupils dilated following the presentation of a tactile stimulus, and the amplitude of
task-evoked pupil dilation is positively correlated with the intensity of tactile stimulus ( Figure 2B,
p<8.7e-24, one-way ANOVA test). Pupil dynamics around stimulus presentation varied across
the four behavioral outcomes (i.e. hit, correct rejection, miss, and false alarm) (Figure 2C). Similar
to rats’ pupil dynamics in a tactile discrimination task, pupil dilations are dependent upon the
baseline pupil size: the larger the baseline pupil size, the smaller the pupil dilation, resulting in
negative correlation coefficients between the baseline pupil size and pupil dilation (Figure 2D-F).
This negative correlation was more profound in response trials than in withheld trials (Figure 2F,
p<3.8e-4, Wilcoxon signed-rank test).
We found that the baseline pupil size was smallest for false alarm trials (-0.43±0.12),
followed by hit (-0.24±0.02), correct rejection (-0.14±0.04), and miss trials (0.16±0.06) ( Figure
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2G, p<8e-5, one-way ANOVA test), suggesting that pupil-linked arousal modulates tactile
detection performance. Interestingly, in contrast to rats, the baseline pupil size of the mice was
smaller on response trials than on withheld trials ( Figure 2G, -0.24±0.02 vs. 0.06±0.04, p<2.2e-
7, Wilcoxon signed-rank test, see Discussion). However, the task evoked pupil dilation across
the four behavioral outcomes is similar to that in rats performing tactile discrimination tasks, with
largest pupil dilation in hit trials (0.48±0.04), followed by false alarm (-0.35±0.07), miss
(0.01±0.03), and correct rejection trials (-0.03±0.02) (Figure 2H, p<7.7e-8, one-way ANOVA test).
Moreover, task evoked pupil dilation is larger in response trials than in withheld trials (Figure 2H,
0.48±0.04 vs. 0.01±0.02, p<8.7e-14, Wilcoxon signed-rank test).
Consistent with previous work, the perceptual behavior of our animals was dependent
upon baseline pupil size (Schriver et al., 2018). Although the reaction time did not depend on the
baseline pupil size (Figure 2I, p=0.27, one-way ANOVA test), the animals had the highest
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detection performance during the lowest tercile of baseline pupil size, and had the lowest
detection performance during the highest tercile of baseline pupil size ( Figure 2J). On average,
the higher the baseline pupil size, the lower response rate, but this trend was not significant
(p=0.10, two-way ANOVA). There was a similar trend toward a dependence of perceptual
sensitivity on baseline pupil size (Figure 2K, p=0.14, two-way ANOVA).
Correlated NE dynamics between the primary somatosensory cortex and prefrontal cortex
We next examined NE dynamics in the prefrontal cortex and the barrel cortex during the
tactile detection task. Extracellular NE dynamics were measured through fiber photometry
recording of fluorescent signals of GRAB
NE sensors, which were expressed in the whisker primary
somatosensory cortex (S1) and the prefrontal cortex (PFC) (Feng et al., 2019) ( Figure 3A). NE
signals in the S1 and PFC prior to stimulus presentation were strongly synchronized as indicated
by a peak in the shuffle corrected cross correlogram at a lag of 0 s between the two signals
(Figure 3B ). We next examined if the correlation between NE dynamics in the S1 and PFC
differed across the four behavioral outcomes ( Figure 3C). There was a significant difference in
peak correlation coefficient across the behavioral outcomes ( Figure 3D, p=0.03, ANOVA test).
There was a significant difference in peak correlation coefficient between response and withheld
trials (p=0.004, Wilcoxon signed-rank test) but not between correct and incorrect trials ( Figure
3D, p=0.17, Wilcoxon signed-rank test).
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NE dynamics in S1 and PFC during the detection task
Task-evoked NE dynamics in S1 and PFC were dependent on the intensity of tactile
stimulus (Figure 4A). The NE dynamics in the S1 were bimodal, with the first peak emerging at
around 0.6 s following stimulus presentation. The second peak, which is comparable with the first
peak in amplitude, occurred at around 3.5 s following stimulus presentation (Figure 4A). Although
there were no significant differences in baseline NE levels in S1 across hit, correct rejection, false
alarm, and miss trials (p=0.37, one-way ANOVA test), the task evoked increase in S1 NE levels
were different across the four behavioral outcomes (p<4.3e-18, one-way ANOVA test) ( Figure
4B-D). In general, NE increases on action trials were higher than on withheld trials (p<2.5e-15,
Wilcoxon signed-rank test) (Figure 4D). We next examined if baseline NE levels in S1 had effects
on the detection behavior by assessing reaction time and response probability on trials in the
different baseline NE terciles. We found that reaction time was not dependent on baseline NE
levels (Figure 4E, p=0.39, one-way ANOVA test). However, baseline NE levels in S1 appeared
to have a strong influence on the response probability, with highest response probability occurred
on trials in the medium baseline NE tercile (p=0.022 for NE effect, p<10e-32 for stimulus effect,
p=0.73 for interaction; two-way ANOVA test, Figure 4F ). This indicated an inverted-U shaped
relationship between tonic NE level in S1 and detection performance (Wekselblatt and Niell,
2015).
NE dynamics in PFC were slightly different than in S1: the decay of the first peak was
faster and the amplitude of the second peak was about the half of the first peak ( Figure 4G),
suggesting that the noradrenergic projection to the S1 and PFC may originate from different
subpopulations of LC neurons (see Discussion). Similar to NE dynamics in S1, there were no
significant differences in baseline NE levels in PFC across hit, correct rejection, false alarm, and
miss trials (p=0.15, one-way ANOVA test) (Figure 4H&I). The task evoked increase in NE levels
in PFC were different across the four behavioral outcomes (p<4.8e-16, one-way ANOVA test),
with NE increase in action trials being higher than in withheld trials (p<3.7e-13, Wilcoxon signed-
rank test) ( Figure 4J). Reaction time was not dependent on baseline NE levels in PFC either
(Figure 4K, p=0.92, one-way ANOVA test). The inverted-U shaped relationship between tonic
NE levels and detection performance was also evident in PFC: mice had the highest detection
performance when the baseline NE level is medium (p=0.014 for NE effect, p<10e-32 for stimulus
effect, p=0.86 for interaction; two-way ANOVA test, Figure 4L).
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GLM-HMM modeling of behavioral state
Recent work has revealed that mice switch between several strategies, identified as the
state of HMM models, in perceptual decision-making tasks (Ashwood et al., 2022). Because
behavioral state exerts strong influence on behavioral performance, we then examined if GLM-
HMM models would be able uncover the behavioral states that the mice were in during the
detection task (Figure 5A). We compared the prediction accuracy of the lapse model and GLM-
HMM models with different inputs and numbers of states (see Methods). The elbow plot
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illustrating the relationship between model perform ance and number of states suggested that a
4-state GLM-HMM model using baseline pupil size and stimulus strength as inputs had an optimal
tradeoff between model accuracy and risk of over-fitting (Figure 5B ). During the task, the mice
were mostly dwelling in state 3, which was associated with the highest detection performance,
while spending the least numbers of trials in state 1 ( Figure 5C&D , p<0.031, ANOVA test).
Although the mice appeared to randomly switch between different behavioral states, the
probability of remaining in the same state (0.86±0.04) was substantially higher than probability of
switching to other states (Figure 5E&F). We did not find any difference in reaction time across
the 4 states. Mice had the highest decision criterion (i.e. most conservative) during the state 0
and the lowest decision criterion (i.e. most liberal) during the state 3, but the differences were
marginally significant (p=0.07, one-way ANOVA test).
Behavioral state dependent task-evoked pupil dilation and NE dynamics
Since we incorporated baseline pupil-linked arousal levels into the GLM-HMM model to
reveal latent behavioral states, we next examined task-evoked pupil dilation during the different
behavioral states ( Figure 6A). The baseline pupil size was different across the four behavioral
states for each behavioral outcome (Figure 6B, p < 2.8e-5 ANOVA tests). However, we failed to
find a consistent trend for baseline pupil size across the four states except that the baseline pupil
size was always largest in withheld trials during state 3. Task-evoked pupil dilation was also
different across the four behavioral states for each behavioral outcome ( Figure 6C; p < 0.024,
ANOVA tests). Pupil dilation appeared to be largest on response trials during state 0.
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NE dynamics in S1 barely exhibited any differences in baseline NE levels across the four
states for all behavioral outcomes ( Figure 7A,B). However, we found different task-evoked NE
dynamics across the four states for hit, miss and correct rejection trials. For hit trials, task-evoked
NE dynamics in S1 were similar across states ( Figure 7A ). For miss trials, task-evoked NE
dynamics in state 1 were more similar to in state 3 than in the other 2 states ( Figure 7A,C). For
CR trials, task-evoked NE dynamics in state 0 were distinct from those in the other 3 states
(Figure 7A,C).
Similarly, NE dynamics in PFC did not exhibit any differences in baseline NE levels across
the four states for all behavioral outcomes (Figure 7D,E ). However, task-evoked PFC NE
dynamics in states 1, 2 and 3 were similar to each other but differed from task-evoked NE
dynamics in state 0 in hit trials, demonstrating the different feature of NE dynamics between S1
and PFC ( Figure 7D,F). For miss trials, task-evoked NE dynamics in state 1 were similar to in
state 3 while task-evoked NE dynamics in state 0 were similar to in state 2 (Figure 7D,F).
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Synchronization of NE dynamics between S1 and PFC differed significantly between
states ( Figure 8 ), Specifically, during baseline activity, there was significantly higher shuffle-
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corrected cross correlation between NE in S1 and PFC at a lag of 0 s during state 0 (putatively
disengaged, low response probability) compared to the other states (p < 6.1e-4, ANOVA test).
Discussion
In this study we trained mice to perform a whisker-based tactile signal detection task while
simultaneously monitoring pupil dynamics and NE activity in S1 and PFC using GRAB NE fiber
photometry. We found that both pupil size and synchronization of cortical NE signals were tightly
linked to whether the animal reported the stimulus (hit and false alarm trials) versus withheld a
response (miss and correct rejection trials), but that baseline pupil size and NE dynamics carried
distinct information about behavioral state. Together, these results support a nuanced view in
which pupil size and cortical NE are related but not interchangeable readouts of arousal and
engagement (Joshi and Gold, 2020; Cazettes et al., 2021; Liu et al., 2021; Yang et al., 2021;
Megemont et al., 2022; Grujic et al., 2024; Weiss et al., 2025).
Consistent with previous work in rodents, we observed large, reliable pupil dilations
following stimulus onset and during licking on hit trials, as well as similarly robust dilations on false
alarm trials, with minimal changes on miss and correct rejection trials. The latency from stimulus
onset to pupil dilation in our detection task was relatively short (on the order of ~100 ms), shorter
than reported in whisker-based discrimination paradigms that require texture or direction
judgments, where dilation emerges later (Lee and Margolis, 2016; Schriver et al., 2018). In
addition, baseline pupil size also differed systematically across behavioral outcomes between this
study and a previous study using rat models. Mice showed larger baseline pupils on trials in which
they subsequently withheld a response (miss and correct rejection) and smaller baseline pupils
on trials in which they responded (hit and false alarm). Although this finding supports the use of
baseline pupil size as an index of arousal or engagement, it runs opposite to what we previously
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observed in rats performing a more complex tactile discrimination task, where baseline pupil size
tended to be higher on responded trials (Schriver et al., 2018). While this may reflect some
genuine difference between species, these differences are likely related to task demands:
detection requires only deciding whether a stimulus is present, whereas discrimination requires
additional sensory evaluation and decision processes that may delay the arousal-related pupil
response.
Using GRAB
NE, we observed rapid, stimulus-locked increases in NE in both cortical
regions on hit and false alarm trials, and negligible changes on miss and correct rejection trials,
mirroring the behavioral outcome dependence of the pupil response. However, the temporal
profiles of NE signals are distinct between S1 and PFC. On hit trials, NE in PFC showed a sharp
transient peak followed by a broader, lower-amplitude elevation, whereas NE in S1 exhibited two
broader peaks of comparable magnitude. These distinct temporal patterns suggest that
noradrenergic signaling from the LC is not broadcast uniformly to all cortical targets; rather,
distinct subpopulations of noradrenergic neurons in the LC project with distinct task-related
spiking dynamics project to different cortical areas (Totah et al., 2018; Breton-Provencher et al.,
2021; Kelberman et al., 2024). In support of this notion, recent work has shown that distinct
subpopulations in LC project to basal forebrain and PFC with only 30% overlap in neurons that
project to both (Liu et al., 2025).
The feedback from PFC to LC may shape this divergence in NE dynamics (Poe et al.,
2020; Totah et al., 2021; Kelberman et al., 2024). PFC provides the densest cortical input to LC
and has been proposed to use LC as a hub to broadcast control signals to other brain regions
(Jodoj et al., 1998; Mashour et al., 2022). Stimulation of PFC can elicit LC spiking, whereas
stimulation of more lateral frontal regions is less effective, suggesting a privileged PFC–LC
pathway (Jodoj et al., 1998). In this framework, excitatory projections from PFC onto inhibitory LC
interneurons could transiently suppress LC output back to PFC, producing a sharp peak followed
by a rapid decline in NE in PFC (Breton-Provencher and Sur, 2019). At the same time, excitatory
projections from PFC onto LC noradrenergic neurons that project to S1 could maintain a more
sustained elevation of NE in S1, consistent with the longer-lasting S1 responses that we observed
(Figure 4). Alternatively, noradrenergic projections from LC to PFC may exhibit increased
expression of presynaptic inhibitory α2 receptors compared to those that project to S1. Although
our data are correlational, this model provides a testable circuit-level explanation for the observed
differences between PFC and S1.
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Interestingly, in contrast to baseline pupil size, baseline NE levels in S1 and PFC did not
predict whether the animal would respond on the trial. Instead, we found that the correlation of
GRABNE signals between S1 and PFC during the baseline period was higher on withheld trials
than on responded trials (Figure 3). If LC contains partially segregated subpopulations projecting
to S1 and PFC, greater baseline synchrony between these projections may reflect a more
homogeneous, low-information state of noradrener gic drive during behavioral disengagement
(Wang et al., 2010). In contrast, lower cross-correlation before responded trials could indicate
more differentiated, target-specific NE signaling when the animal is engaged and prepared to
report stimuli. Thus, whereas baseline pupil area appears to index a global arousal or
engagement, the baseline coordination of NE across cortical targets may capture a more circuit-
specific facet of the animal’s internal state.
Here we showed that HMM-GLM framework developed by Ashwood et al. (2022) could
be effectively extended to a simple stimulus detection task with model outputs corresponding to
Go vs. No-Go rather than a forced choice (left vs. right). Previous work has extended the HMM-
GLM framework to reversal learning tasks and unforced two choice tasks (e.g. left, right, no
response) (Le et al., 2023; Hulsey et al., 2024). Interestingly, the model achieved better predictive
accuracy by using baseline pupil area as the model input rather than the outcome or action taken
on the previous trial ( Figure 5). We also found distinct task-related pupil dynamics across the
four states (Figure 6). These differences in pupil dynamics (not just baseline pupil area) between
states suggest that the latent states identified in the HMM-GLM framework corresponded to
genuine brain states. Differences in noradrenergic dynamics between states were modest,
however (Figure 7 ). In state 0, the disengaged low-response-probability state, we observed
significantly higher cross correlation during baseline between the GRAB
NE signals recorded in S1
and PFC ( Figure 8), consistent with our findings showing higher GRAB NE signal correlations
between S1 and PFC on withheld trials than on responded trials. There were, however, no
differences in the correlation of GRAB
NE signals between S1 and PFC across the other behavioral
states. Future work is warranted to elucidate how norepinephrine differentially modulates task-
relevant neural information processing across these latent states.
Acknowledgements
This work was supported by NIH R01NS119813, R01AG075114, R21MH125107, and NSF CBET
1847315.
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(which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made
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Data availability
All data and code are available upon request.
Disclaimer
Q.W. is a co-founder of Sharper Sense.
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